Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,208,729 – 3,208,831 |
Length | 102 |
Max. P | 0.506147 |
Location | 3,208,729 – 3,208,831 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -24.15 |
Energy contribution | -24.40 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.08 |
Mean z-score | -1.49 |
Structure conservation index | 0.80 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506147 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3208729 102 - 27905053 GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAACGGAAGUGUAGGUUGAAGCUGGGGAAGCUGCUCUGCAGUUUGUGUCAGGGCCAACGAGCGCAUUU ((((..(((((..((..(........(((((((....).....))))))...((((((.(((......))).)))))).)..))..))).))..)))).... ( -31.10) >DroSec_CAF1 28075 102 - 1 GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAGCUGGGGAAGCUGCUCGGCAUUUUGUGACAGGGCCAACGAGCGCAUUU ((((..(((((..((...(..(((..(((((.....((....))))))).....((((((.......)))))).)))..)..))..))).))..)))).... ( -31.60) >DroSim_CAF1 34897 102 - 1 GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAGCUGGGGAAGCUGCUCUGCAGUUUGUGUCAGGGCCAACGAGCGCAUUU ((((..((.....((((..(((..(..((((((..(((((.......(((....))).......)))))))))))..)...)))..))))))..)))).... ( -31.54) >DroEre_CAF1 27402 93 - 1 GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAG---GGGAACUUG-----CAG-UUGUGUCAGGGCCAACGAGCGCGUUU ((((..(((((..((..(.((.(((((((((.....((....))....)).....---))).)))).-----)).-...)..))..))).))..)))).... ( -26.80) >consensus GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAGCUGGGGAAGCUGCUCUGCAGUUUGUGUCAGGGCCAACGAGCGCAUUU ((((..(((((..((..(........(((((.....((....)))))))............(((((((...))))))).)..))..))).))..)))).... (-24.15 = -24.40 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:28 2006