Locus 10188

Sequence ID 3R_DroMel_CAF1
Location 27,322,004 – 27,322,095
Length 91
Max. P 0.590666
window16222

overview

Window 2

Location 27,322,004 – 27,322,095
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 97.07
Mean single sequence MFE -31.20
Consensus MFE -29.89
Energy contribution -29.45
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.55
Structure conservation index 0.96
SVM decision value 0.11
SVM RNA-class probability 0.590666
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27322004 91 + 27905053
CCCCUGAAUCUUGGAGUCUCCAUUCGCGGCCGUAAUUGAUGACGGUUAUGGAUAGGGUUAGGUGGAGGGGCAGGGUAGUGGGAGGCAACGA
.(((...((((((...(((((((((.(..(((((((((....)))))))))...).)...))))))))..))))))...))).(....).. ( -30.20)
>DroSec_CAF1 27342 91 + 1
CCCCUGAAUCUUGGAGUCUCCAUUCCCGGCCGUAAUUGAUGACGGUUAUGGAUAGGGUUAGGUGGAGGGGCAGGGUAGUGGGAGGCAACGA
.(((...((((((...(((((((((((..(((((((((....)))))))))...)))...))))))))..))))))...))).(....).. ( -35.10)
>DroEre_CAF1 31634 91 + 1
CCCCUGAAUCUUGAAGUCUCCAUUCGCGGCUGUAAUUGAUGACGGUUAUGGAUAGGGUUAGGUGGAGGGGCAGGGUAGUGGGAGGCAACGA
.(((...((((((...(((((((((.(..(((((((((....)))))))))...).)...))))))))..))))))...))).(....).. ( -28.40)
>DroYak_CAF1 23850 91 + 1
CCCCUGGAUCCUGGAGUCUCCAUUCGCGGCUGUAAUUGAUGACGGUUAUGGAUAGGGUUAGGUGGAGGGGCAGGGUAGUGGGAGGCAACGA
.(((...((((((...(((((((((.(..(((((((((....)))))))))...).)...))))))))..))))))...))).(....).. ( -31.10)
>consensus
CCCCUGAAUCUUGGAGUCUCCAUUCGCGGCCGUAAUUGAUGACGGUUAUGGAUAGGGUUAGGUGGAGGGGCAGGGUAGUGGGAGGCAACGA
.(((...((((((...(((((((((.(..(((((((((....)))))))))...).)...))))))))..))))))...))).(....).. (-29.89 = -29.45 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:57 2006