Locus 10187

Sequence ID 3R_DroMel_CAF1
Location 27,321,112 – 27,321,209
Length 97
Max. P 0.671648
window16221

overview

Window 1

Location 27,321,112 – 27,321,209
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.19
Mean single sequence MFE -28.02
Consensus MFE -10.71
Energy contribution -13.95
Covariance contribution 3.24
Combinations/Pair 1.11
Mean z-score -1.90
Structure conservation index 0.38
SVM decision value 0.29
SVM RNA-class probability 0.671648
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27321112 97 + 27905053
------------CCA-AUCCCACCAACCUGUCUUUG-------CCUACUCGAUGGU-UCAUUCUAGCAAUCGUCGCAAUGAUCAUCAUAAUCGUGAUCGUUUU-GGAAUCGGGCUUGGG-
------------(((-(.(((.((((..........-------......(((((((-((......).)))))))).(((((((((.......)))))))))))-))....))).)))).- ( -25.50)
>DroSec_CAF1 25979 104 + 1
CCA------GUCCCA-AUCCCACCAACCUGUCUUUG-------CCUACUCGAUGGU-UCUUUCUAGCAAUCGUCGCAAUGAUCAUCAUAAUCGUGAUCGUUUU-GGGAUCGGACUUUGGU
(((------((((..-((((((..............-------......(((((((-(((....)).)))))))).(((((((((.......))))))))).)-))))).))))..))). ( -30.40)
>DroEre_CAF1 26230 102 + 1
CCA------AUUCCA-AUCCCACCAACCUGUCU-UU-------CCUACUCGAUGGU-UCAUUCCAGCAAUCGUCGCAAUGAUCAUCAUAAUCGUGAUCGUUUU-GGGAUCGGGUUUGGG-
(((------(..((.-((((((...........-..-------......(((((((-((......).)))))))).(((((((((.......))))))))).)-))))).))..)))).- ( -31.30)
>DroYak_CAF1 22368 109 + 1
CCAACUGCAAUCCCA-AUCCCACCAACCUGUCCUUG-------CCUACUCGAUGGU-UCAGUCCAGCAAUCGUCGCAAUGAUCAUCAUAAUCGUGAUCGUUUU-GGGAUCGGGUUUGUG-
......((((.(((.-((((((.....(((..((.(-------((........)))-..))..)))..........(((((((((.......))))))))).)-))))).))).)))).- ( -32.40)
>DroAna_CAF1 29299 106 + 1
-AG------GCCGCA-AA---GCCAACCUGUCUCUGUCCCACACCCACUCCCGGUC-CCCUGGUUGCGUUCC-CCAAAUGAUCAUCAUAAUCGUGAUCGUUUCAGGGAUCGGGCUCGGA-
-.(------((....-..---)))....................((...(((((((-((..((.......))-..((((((((((.......))))))))))..)))))))))...)).- ( -32.00)
>DroPer_CAF1 12066 88 + 1
CCG------UCUCCACAUCCCACCAC--AGUCC-----------------CAUCGUCCCACAGUCGUAAUCGUCGCAAUGAUCAUCAUAAUCGUGAUCGUUUU------CGGGUUCGGG-
(((------..(((............--.....-----------------............(.((....)).)..(((((((((.......)))))))))..------.)))..))).- ( -16.50)
>consensus
CCA______AUCCCA_AUCCCACCAACCUGUCUUUG_______CCUACUCGAUGGU_UCAUUCUAGCAAUCGUCGCAAUGAUCAUCAUAAUCGUGAUCGUUUU_GGGAUCGGGCUUGGG_
......................((((((((((((...............(((((((............))))))).(((((((((.......)))))))))...)))).)))).)))).. (-10.71 = -13.95 +   3.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:56 2006