| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,320,734 – 27,320,838 |
| Length | 104 |
| Max. P | 0.767031 |
| Location | 27,320,734 – 27,320,838 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 72.47 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -5.18 |
| Energy contribution | -7.20 |
| Covariance contribution | 2.02 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27320734 104 - 27905053 CCC---CUCCCGCGAUGAGCCCCAAUUUGGCAGUGUUAUUACAGCAUCUGGGAAUAUUCUCCUCACAAGCUAACACCUC---UCCCCAC----CUAAUGGGAUCUGGCCAAGUU ...---.....((.....))...((((((((.(((((.....(((...(((((......))).))...))))))))...---..((((.----....)))).....)))))))) ( -23.80) >DroSec_CAF1 25595 104 - 1 CCC---CUCCUGCGAAGAGCCUCAAUUUGGCAGUGUUAUUACAGCAUCUGGGAAUAUUCUCCUCACAAGCUAACACCUC---UCCCCAC----CUCAUGGGAUCUGGCCAAGUU ...---.....((.....))...((((((((.(((((.....(((...(((((......))).))...))))))))...---..((((.----....)))).....)))))))) ( -23.50) >DroEre_CAF1 25858 102 - 1 CCC---CUCCCGUGAAGAGCACCAAUUUGGCAGUGCUCUUACAGCAUCUGGGAAUAUUCUCCUCACAAUCUAACACCUA---UCCCC------CUCCUGAGGUCUGGCCAAGAU .((---(....((.((((((((..........))))))))...))....)))........(((((..............---.....------....)))))(((.....))). ( -20.70) >DroYak_CAF1 21977 108 - 1 UCC---CUCCCGUGAGGAGCCCCAAUUUGGCGGUGCUAUUACAGCAUCUGGGAAUAUUCUCCUCACAAUCUAACACCUA---UUCCCUCCCUUCUUCUUGUGUCUGGCGAAGUU (((---(..((....)).(((.......)))((((((.....)))))).))))...(((.((.(((((...........---...............)))))...)).)))... ( -25.97) >DroAna_CAF1 28917 98 - 1 CCCCUCCUCCCCUG-AGAGCCUUUA-----------UGUUAUGGCCUCUGAGAGUAUUCAGCUCACAGCUUCACACCUCGGAUGCCCCGCA--CUCUCUGGCUCUU--CCGGGU ........(((..(-((((((....-----------(((...(((.((((((.((....(((.....)))....)))))))).)))..)))--......)))))))--..))). ( -33.70) >consensus CCC___CUCCCGUGAAGAGCCCCAAUUUGGCAGUGCUAUUACAGCAUCUGGGAAUAUUCUCCUCACAAGCUAACACCUC___UCCCCAC____CUCAUGGGAUCUGGCCAAGUU ......(((.......)))....((((((((.(((((.....))))).((((.........)))).........................................)))))))) ( -5.18 = -7.20 + 2.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:56 2006