| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,320,296 – 27,320,387 |
| Length | 91 |
| Max. P | 0.800699 |
| Location | 27,320,296 – 27,320,387 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 78.13 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -12.07 |
| Energy contribution | -12.97 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.800699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27320296 91 - 27905053 GGCUGCUGCCUAGC--G--AGGUCCCACCUGAACCACAGUUCAGUGUGGAGGCCUAUUACGUGAUGAUGUAAUAAUUCUUUGAGUCGUUGGCAGU ....((((((.(((--(--(((((((((((((((....)))))).)))).))))((((((((....))))))))..........))))))))))) ( -40.70) >DroPse_CAF1 11015 89 - 1 GGCAGGAGGCGGGA--GGCAGG---GACCUCAACCUC-GUCCAGGUCCAAGGCCUAUUACGUGAUGAUGUAAUAAUUCUUCAAGUUGUUGGCAUU .((....(((..((--(((..(---(((((..((...-))..))))))...)))((((((((....)))))))).....))..)))....))... ( -26.90) >DroSec_CAF1 25156 91 - 1 GGCUGCUGCCUAGC--G--AGGUCCCACCUGAACCUCAGUUCAGUGCGGAGGCCUAUUACAUGAUGAUGUAAUAAUUCUUUGAGUCGUUGGCAGU ....((((((.(((--(--(((((((.(((((((....)))))).).)).))))((((((((....))))))))..........))))))))))) ( -37.20) >DroEre_CAF1 25433 91 - 1 GGCUGCUGCCUAGC--G--CGGUCUCACCUGAACCACAGUUCAGUGUGGAGGCCUAUUACGUGAUGAUGUAAUAAUUCUUUGAGUCGUUGGCAGU ....((((((.(((--(--(((((((((((((((....)))))).)).))))))((((((((....)))))))).........).)))))))))) ( -37.30) >DroYak_CAF1 21563 80 - 1 GGCUGCUGCCU---------------ACCUGAACUACAGUUGAGUGUGGAGGCCUAUUACGUGAUGAUGUAAUAAUUCUUUGAGUCGUUGGCAGU .((((((((((---------------.((...(((.(....))))..)))))).((((((((....))))))))...............)))))) ( -22.40) >DroAna_CAF1 28474 81 - 1 GGCUGCUACUUCGAAAG--AAGUCCCACCUGAGUC------------CGAGGCCUAUUACGUGAUGAUGUAAUAAUUCUUCGAGUUGUUGGCAGU .(((((((((((....)--))))........((..------------(((((..((((((((....))))))))...)))))..))...)))))) ( -25.90) >consensus GGCUGCUGCCUAGC__G__AGGUCCCACCUGAACCACAGUUCAGUGUGGAGGCCUAUUACGUGAUGAUGUAAUAAUUCUUUGAGUCGUUGGCAGU ....((((((..........((.....)).................((((((..((((((((....))))))))..)))))).......)))))) (-12.07 = -12.97 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:55 2006