Locus 10180

Sequence ID 3R_DroMel_CAF1
Location 27,306,188 – 27,306,307
Length 119
Max. P 0.987153
window16210

overview

Window 0

Location 27,306,188 – 27,306,307
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 95.13
Mean single sequence MFE -25.34
Consensus MFE -24.52
Energy contribution -24.12
Covariance contribution -0.40
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.97
SVM decision value 2.07
SVM RNA-class probability 0.987153
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27306188 119 - 27905053
UUACUUUUGCUAUUUCAUCCCGAUGUCCACAGUCCGGAGUACUAUUCCUUGCUUUUUUCCCCGCCUUCCUUACAUGGAAAUCGUUUUCGAUAUUGCCGAUGGCGCAGGAGAACCCCUCC
...(((((((....(((((.(((((((...(((..(((((...)))))..)))........((..((((......))))..)).....)))))))..))))).)))))))......... ( -26.20)
>DroSec_CAF1 11158 119 - 1
UUACUUUUGCUAUUUCAUCCCGAUGUCCACAGUCCAGAGUACAAUUCCUUGCCUUUUUCCCCGCCUUCCUUACAUGGAAAUCGUUUUCGAUAUCGCCGAUGGCGCAGGAGAACCCCUCC
...(((((((....(((((.(((((((........((.(((........))))).......((..((((......))))..)).....)))))))..))))).)))))))......... ( -23.70)
>DroSim_CAF1 11585 119 - 1
UUACUUUUGCUAUUUCAUCCCGAUGUCCACAGUCCGGAGUACAAUUCCUUGCCUUUUUCCCCGCCUUCCUUACAUGGAAAUCGUUUUCGAUAUCGCCGAUGGCGCAGGAGAACCCCUCC
...(((((((....(((((.(((((((....((..(((((...)))))..)).........((..((((......))))..)).....)))))))..))))).)))))))......... ( -27.30)
>DroEre_CAF1 11442 119 - 1
UUUCUUUUGCUAUUUCAUCCCGAUGUCCACUGUCCGGAGUACAAUUCCUUGCCUUUUCCCCCGCCUUCCUUACAUGGAAAUCGUUUUCGAUAUUGCCGAUGGCGCAGAAGAACCCCUCC
.(((((((((....(((((.(((((((........(((((...))))).............((..((((......))))..)).....)))))))..))))).)))))))))....... ( -27.30)
>DroYak_CAF1 7494 119 - 1
UUUCUUUUGCUAUUUCAUCCCGAUGUCCACAGUCCGGAAUACAAUUCCUUGCCUUAUUCCCCGCCUUCUCUACAUGGAAAUCGUUUUCGAUAUCGCCGAUGGCGCAGAAAAACCCCUCC
....((((((....(((((.(((((((....((..(((((((((....)))...))))))..))............((((....)))))))))))..))))).)))))).......... ( -22.20)
>consensus
UUACUUUUGCUAUUUCAUCCCGAUGUCCACAGUCCGGAGUACAAUUCCUUGCCUUUUUCCCCGCCUUCCUUACAUGGAAAUCGUUUUCGAUAUCGCCGAUGGCGCAGGAGAACCCCUCC
...(((((((....(((((.(((((((....((..(((((...)))))..)).........((..((((......))))..)).....)))))))..))))).)))))))......... (-24.52 = -24.12 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:47 2006