| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,304,820 – 27,304,918 |
| Length | 98 |
| Max. P | 0.681395 |
| Location | 27,304,820 – 27,304,918 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -38.88 |
| Consensus MFE | -22.96 |
| Energy contribution | -23.68 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27304820 98 + 27905053 UUGGUCUGGGA--------GUAGGUCUGG------CUUU--------UGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUAGUCGCAGGCUU ..((((((.((--------.(((((((.(------(((.--------..((((...(((.((((....))))))).))))....)))).)))))...((....))..)).)).)))))). ( -41.20) >DroSec_CAF1 9789 106 + 1 UUGGUCUGGGA--------GUAGGUCUGG------CUUUUUUUUUUUUUGGCUUGAGGUGUGAGAGUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUAGUCGCAGGCUU ..((((((.((--------.(((((((.(------(((.........((((((((((((((....))))))...))))))))..)))).)))))...((....))..)).)).)))))). ( -39.80) >DroSim_CAF1 10212 98 + 1 UUGGUCUGGGA--------GUAGGUCUGG------CUUU--------UGGGCUUGAGGUGUGAGACUACUUAGCUGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUAGUCGCAGGCUU ..((((((.((--------.(((((((.(------(((.--------..((((...(((.((((....))))))).))))....)))).)))))...((....))..)).)).)))))). ( -39.30) >DroEre_CAF1 10039 98 + 1 UUGGUCUGGGA--------GUAAGUCUGG------CUUU--------CGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUAGUCGCCGGCUU (((((((((((--------(((.((((.(------((((--------((....))))).)).)))))))))..)))))))))..((((.(((((....)))..(((....))))).)))) ( -38.90) >DroYak_CAF1 6104 106 + 1 UUGGUCUGGGCUUAAGUCUGUAAGUCUGG------CUUU--------UGGGCUUGAGGUGUGAGACUACUUAGCCAGGCCAACUAAGCGGGGCCAAACGGCAACGAUUAGUCGCCGGCUU .((((((.(.((((((((((.(((.....------))).--------))))))))))...).))))))...((((.(((..(((((.((..(((....)))..)).))))).))))))). ( -41.00) >DroAna_CAF1 11282 101 + 1 ACCGUCUGAGG--------CGAUGUUUGAGCUGGUCUUG--------UGG---AGAGGUGUGAGGCUAUUUAGCCAGGCCAGCUAACCCGGACCAAGCAGAAGCGAUUAGUCGCGGAUUU .((((((((.(--------(..(((((((((((((((.(--------(.(---((.(((.....))).))).)).))))))))).........))))))...))..))))..)))).... ( -33.10) >consensus UUGGUCUGGGA________GUAGGUCUGG______CUUU________UGGGCUUGAGGUGUGAGACUACUUAGCCGGGCCAACUAAGCGGGGCCAAACGGCAACGAUUAGUCGCAGGCUU ..((((((.(.......................................((((...(((.((((....))))))).)))).(((((.((..(((....)))..)).)))))).)))))). (-22.96 = -23.68 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:44 2006