Locus 10177

Sequence ID 3R_DroMel_CAF1
Location 27,304,687 – 27,304,790
Length 103
Max. P 0.932000
window16206

overview

Window 6

Location 27,304,687 – 27,304,790
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.93
Mean single sequence MFE -29.63
Consensus MFE -29.08
Energy contribution -29.13
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.07
Structure conservation index 0.98
SVM decision value 1.22
SVM RNA-class probability 0.932000
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27304687 103 - 27905053
GCGUCUGCU-------AAUAUUUCGGCCUGCCAGCGUGGCCACAACUCAAUUAGGAUGCUUGGAAAUGAUUCAUUCUAAUCUCAAGUCGGGUAUCUGCAGUCAUGAAGUC----------
..(.((((.-------........((((((....)).))))............((((((((((....((((......)))).....)))))))))))))).)........---------- ( -27.70)
>DroSec_CAF1 9656 103 - 1
GCGUCUGCU-------AAUAUUUCGGCCUGCCAGCGUGGCCACAACUCAAUUAGGAUGCCUGGAAAUGAUUCAUUCUAAUCUCAAGUCGGGUAUCUGCAGUCAUGAAGUC----------
..(.((((.-------........((((((....)).))))............((((((((((....((((......)))).....)))))))))))))).)........---------- ( -30.50)
>DroSim_CAF1 10079 103 - 1
GCGUCUGCU-------AAUAUUUCGGCCUGCCAGCGUGGCCACAACUCAAUUAGGAUGCCUGGAAAUGAUUCAUUCUAAUCUCAAGUCGGGUAUCUGCAGUCAUGAAGUC----------
..(.((((.-------........((((((....)).))))............((((((((((....((((......)))).....)))))))))))))).)........---------- ( -30.50)
>DroEre_CAF1 9899 110 - 1
GCGUCUGCUAACAGCUAAUAUUUCGGCCUGCCAGCGUGGCCACAACUCAAUUAGGAUGCCUGGAAAUGAUUCAUUCUAAUCUCAAGUCGGGUAUCUGCAGUCAUGAAGUC----------
..(.((((................((((((....)).))))............((((((((((....((((......)))).....)))))))))))))).)........---------- ( -30.50)
>DroYak_CAF1 5963 103 - 1
GCGUCUGCU-------AAUAUUUCGGCCUGCCAGCGUGGCCACAACUCAAUUAGGAUGCCUGGAAAUGAUUCAUUCUAAUCUCAAGUCGGGUAUCUGCAGUCAUGAAGUC----------
..(.((((.-------........((((((....)).))))............((((((((((....((((......)))).....)))))))))))))).)........---------- ( -30.50)
>DroAna_CAF1 11138 112 - 1
GCGUCUGCU-------AAUAUUUCGGCCUGCCAGCGCGGCCACAACUCAAUUAGGAUGC-UGGAAAUGAUUCAUUCUAAUCUCAAGUCGGGUAUCUGCAGUCAUGAAGUCCGCCCCCUCU
..(.((((.-------........((((.((....))))))............((((((-(.((...((((......)))).....)).))))))))))).).................. ( -28.10)
>consensus
GCGUCUGCU_______AAUAUUUCGGCCUGCCAGCGUGGCCACAACUCAAUUAGGAUGCCUGGAAAUGAUUCAUUCUAAUCUCAAGUCGGGUAUCUGCAGUCAUGAAGUC__________
..(.((((................((((((....)).))))............((((((((((....((((......)))).....)))))))))))))).).................. (-29.08 = -29.13 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:43 2006