| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,300,031 – 27,300,130 |
| Length | 99 |
| Max. P | 0.768654 |
| Location | 27,300,031 – 27,300,130 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.51 |
| Mean single sequence MFE | -37.68 |
| Consensus MFE | -25.18 |
| Energy contribution | -26.28 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27300031 99 + 27905053 GACAGCUUCCGUCAAUUUAAUGGC--------------UCCUUGCAGGAGGUGGCU-------GGCCAUCCCAGCAGGUGGGGCACCUCCUCCUGCGCCAGCUAUUCCGCGACCAGCUCA (((.......)))........(((--------------(..((((.((((.(((((-------(((.......(((((.((((...)))).)))))))))))))))))))))..)))).. ( -40.61) >DroSec_CAF1 5049 99 + 1 GACAGCUUCCGUCAAUUUAAUGGC--------------UCCUUGCAGGAGGUGGCU-------GGCCAUCCCAGCAGGUGGUGCACCUCCUCUUGCGCCAGCAAUUCCGCGUCCAGCUCA ...((((..(((........((((--------------.....((((((((.((.(-------(((((((......)))))).)))).))))))))))))........)))...)))).. ( -35.09) >DroSim_CAF1 5460 99 + 1 GACAGCUUCCGUCAAUUUAAUGGC--------------UCCUUGCAGGAGGUGGCU-------GGCCAUCCCAGCAGGUGGUGCACCUCCUCCUGCGCCAGCUAUUCCGCGUCCAGCUCA ...((((..(((......((((((--------------(...(((((((((.((.(-------(((((((......)))))).)))).)))))))))..)))))))..)))...)))).. ( -38.90) >DroEre_CAF1 5169 99 + 1 GACAGCUUCCGUCAACUUAAUGGC--------------UCCUUGCAGGCGGUGGCU-------GGCCAUCCCAGCAGGUGGUGUCUCUCCUCCUGCGCCAGCUAUUCUGCAUCCAGAUCA (((.......))).......(((.--------------....((((((..((((((-------(((.......(((((.((.......)).)))))))))))))))))))).)))..... ( -35.61) >DroYak_CAF1 1131 99 + 1 GACAGCUUCCGUCAAUUUAAUGGC--------------UCCUUGCAGGCGGUGGCU-------GUCCAACCCAGCAGGUGGUUUACCUCCUCCUGCGCCUGCUAUUCCGCAUCCAGAUCA (((((((.(((((.........((--------------.....)).))))).))))-------))).......(((((.((.......)).)))))(..(((......)))..)...... ( -33.00) >DroAna_CAF1 5615 117 + 1 GACAGCUUCCGUCAAGUUAAUGGCUUGGUCAUAAGUUCUCCUCACAGGAGGCGGCUAGCCAGUGGCCAUCCCAGCAGGAGAUCCAUCUCCGACGGUGCC-GAGAUUCGACAUC--GUCCA (((.((..(((((.......(((..(((((((..((.((((.....))))))((....)).)))))))..)))...(((((....)))))))))).))(-(.....)).....--))).. ( -42.90) >consensus GACAGCUUCCGUCAAUUUAAUGGC______________UCCUUGCAGGAGGUGGCU_______GGCCAUCCCAGCAGGUGGUGCACCUCCUCCUGCGCCAGCUAUUCCGCAUCCAGCUCA (((.......)))........(((......................((.((((((((.....)))))))))).(((((.((.......)).)))))))).((......)).......... (-25.18 = -26.28 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:29 2006