Locus 10170

Sequence ID 3R_DroMel_CAF1
Location 27,299,718 – 27,299,809
Length 91
Max. P 0.690771
window16189

overview

Window 9

Location 27,299,718 – 27,299,809
Length 91
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 89.82
Mean single sequence MFE -30.67
Consensus MFE -27.79
Energy contribution -28.40
Covariance contribution 0.61
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.91
SVM decision value 0.33
SVM RNA-class probability 0.690771
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27299718 91 + 27905053
GAAGUUUGAAAAUGUGAAUGCCUCUUUGGAAUUCGAUUGGCUGAGGCUAGGCUAC------GCUAGCCAGGAGCGGGAGCAUUGACAUGGCCAGCAC
...(((.(...((((.((((((((.(((.....)))...(((..((((((.....------.))))))...)))))).))))).))))..).))).. ( -27.40)
>DroSec_CAF1 4730 97 + 1
GAAGCUUGAAAAUGUGAAUGCCUCUUUGGAAUUCGUUUGGCUGAGGCUAGGCUAGGCUUAGGCUAGCCAGGAGCGGGAGCAUUGACAUGGCCAGCAC
...(((.(...((((.((((((((....(....).(((((((.((.((((((...)))))).)))))))))...))).))))).))))..).))).. ( -35.00)
>DroSim_CAF1 5152 86 + 1
GAAGCUUGAAAAUGUGAAUGCCUCUUUGGAAUUCGUUUGGCUGAGGCUAGG-----------CUAGCCAGAAGCGGGAGCAUUGACAUGGCCAGCAC
...(((.(...((((.(((((((((((((.....(((((((....))))))-----------)...)))))...))).))))).))))..).))).. ( -29.60)
>consensus
GAAGCUUGAAAAUGUGAAUGCCUCUUUGGAAUUCGUUUGGCUGAGGCUAGGCUA_______GCUAGCCAGGAGCGGGAGCAUUGACAUGGCCAGCAC
...(((.(...((((.((((((((....(....).....(((..((((((.((......)).))))))...)))))).))))).))))..).))).. (-27.79 = -28.40 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:28 2006