Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,207,682 – 3,207,774 |
Length | 92 |
Max. P | 0.518948 |
Location | 3,207,682 – 3,207,774 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 64.88 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -5.46 |
Energy contribution | -6.72 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.43 |
Mean z-score | -2.30 |
Structure conservation index | 0.19 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3207682 92 - 27905053 ACAGCCAAA---GGGGUGUGGAG--------UGCUGCGUAGCAAUGCUCAGCAUAAGCCACUUUUCACUCGGUUGGGGCAGUCAAUUGCAUGGAAAUUAAAUG-- .(((((...---(..(.((((.(--------(((((.(((....))).))))))...)))).)..)....)))))..((((....))))..............-- ( -29.40) >DroVir_CAF1 35887 88 - 1 ACAGUUCGACUUUAGUCGGGCUGUUUG----UAGGCCAU-----AGAUUG----GAAACACU--UAAAUUGAUU--GGCAUUUAAAUAAAUGCAUUUUUAAUGAC ((((((((((....)))))))))).((----(...(((.-----....))----)..)))..--...(((((..--.((((((....))))))....)))))... ( -23.60) >DroSec_CAF1 27076 92 - 1 ACAGCCAAA---GGGGUGUGGAG--------UGCUGCGUAGAAAUGCUCAGCAUAAGCCACUUUUCACUCGGUUGGGGCAGUCAAUUGCAUGGAAAUUAAAUG-- .(((((...---(..(.((((.(--------(((((.(((....))).))))))...)))).)..)....)))))..((((....))))..............-- ( -29.90) >DroSim_CAF1 33896 92 - 1 ACAGCCAAA---GGGGAGUGGAG--------UGCUGCGUAGAAAUGCUCAGCAUAAGCCACUUUUCACUCGGUUGGGGCAGUCAAUUGCAUGGAAAUUAAAUG-- .(((((...---(..((((((.(--------(((((.(((....))).))))))...))))))..)....)))))..((((....))))..............-- ( -34.40) >DroEre_CAF1 26559 91 - 1 ACAGCCAAA---GGGGUGUGGAG--------UGCUACGUAG-AAUGCUCAGCAUAAGCCACUUUUCACUCGGCUGGGGCAGUCAAUUGCAUGGAAAUUAAAUG-- .(((((...---(..(.((((.(--------((((..((..-...))..)))))...)))).)..)....)))))..((((....))))..............-- ( -24.50) >DroMoj_CAF1 34312 96 - 1 ACAGUUCGACUAUAGUCGGGCUGUUGGGCUCUUGGGCUCGGACAAGCCCA----GAGACACU--UUAAUGGCCU--GGUAUUUAGAUAAAUGCAUU-UGAAUGGC .(((((((((....)))))))))(..((((((((((((......))))))----.)))((..--....))))).--.)(((((((((......)))-)))))).. ( -33.00) >consensus ACAGCCAAA___GGGGUGUGGAG________UGCUGCGUAGAAAUGCUCAGCAUAAGCCACUUUUCACUCGGUUGGGGCAGUCAAUUGCAUGGAAAUUAAAUG__ ...(((..........................((((.(((....))).))))...((((...........))))..))).......................... ( -5.46 = -6.72 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:24 2006