Locus 10168

Sequence ID 3R_DroMel_CAF1
Location 27,299,025 – 27,299,119
Length 94
Max. P 0.713949
window16182

overview

Window 2

Location 27,299,025 – 27,299,119
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.49
Mean single sequence MFE -33.82
Consensus MFE -27.38
Energy contribution -28.27
Covariance contribution 0.89
Combinations/Pair 1.07
Mean z-score -2.13
Structure conservation index 0.81
SVM decision value 0.38
SVM RNA-class probability 0.713949
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27299025 94 - 27905053
UCGACGUUGACAGACGUUGGCAGGCCAAGCAAAUUGGCGCAACACGCUCAAC----------------------GCUUCUCGGCAAUUUGCAUUUGCAUCUGCUGAU--UUGGCUGCA--
.(((((((....)))))))((((.((((((...((((((.....))).))).----------------------))...((((((...(((....)))..)))))).--)))))))).-- ( -34.00)
>DroSec_CAF1 4039 93 - 1
UCGACGUUGACAGACGUUGGCAGGCCAAGCAAAUUGGCGCAACACGCUCAAC----------------------GCUUCUCGGCAAU-UGCAUUUGCAUCUGCUGAU--UUGGCUGCA--
.(((((((....)))))))((((.((((((...((((((.....))).))).----------------------))...((((((..-(((....)))..)))))).--)))))))).-- ( -35.50)
>DroSim_CAF1 4461 94 - 1
UCGACGUUGACAGACGUUGGCAGGCCAAGCAAAUUGGCGCAACACGCUCAAC----------------------GCUUCUCGGCAAUUUGCAUUUGCAUCUGCUGAU--UUGGCUGCA--
.(((((((....)))))))((((.((((((...((((((.....))).))).----------------------))...((((((...(((....)))..)))))).--)))))))).-- ( -34.00)
>DroEre_CAF1 4213 94 - 1
UCCACGUUGACAGACGUUGGCAGGCCAAGCAAAUUGGCGCAACACGCUCAAC----------------------GCUUCUUGGCAAUUUGCAUUUGCAUCUGCUGAU--UUGGCUGCA--
.(.(((((....))))).)((((.(((((((((((((((.....))))....----------------------(((....))))))))))....((....))....--)))))))).-- ( -28.50)
>DroYak_CAF1 119 94 - 1
UCGACGUUGACAGACGUUGGCAGGCCAAGCAAAUUGGCGCAACACGCUCAAC----------------------GCUUCUCGGCAAUUUGCAUUUGCAUCUGCUGAU--UUGGCUGCA--
.(((((((....)))))))((((.((((((...((((((.....))).))).----------------------))...((((((...(((....)))..)))))).--)))))))).-- ( -34.00)
>DroAna_CAF1 4800 120 - 1
GACACGUUGACAGACGUUGGCAGGCCAAGCAAAUUGGCGCAACACGCUCAACAGCAGCACCAACAUAGCUUGAUGCUCCGCAGCAAUUUGCAUUCGCUGAUGCUGAUGUUUUGCUGAUGU
...(((((..(((((((..((((((.(((((((((((((.....)))......((((((.(((......))).))))..))..)))))))).)).)))..)))..))).))))..))))) ( -36.90)
>consensus
UCGACGUUGACAGACGUUGGCAGGCCAAGCAAAUUGGCGCAACACGCUCAAC______________________GCUUCUCGGCAAUUUGCAUUUGCAUCUGCUGAU__UUGGCUGCA__
.(((((((....)))))))((((.((((.....((((((.....))).)))............................((((((...(((....)))..))))))...))))))))... (-27.38 = -28.27 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:23 2006