Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,297,608 – 27,297,728 |
Length | 120 |
Max. P | 0.803277 |
Location | 27,297,608 – 27,297,728 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.47 |
Mean single sequence MFE | -22.95 |
Consensus MFE | -17.92 |
Energy contribution | -18.80 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.86 |
Structure conservation index | 0.78 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27297608 120 + 27905053 GCCUUUUGUCAGUUUAAGCUUACUUACUACAAACUAACUAAAGCAAAAAAACAUCUUGCAAUCUUAUUAAGAGCUACCUUGAUUAUGCAAAUGCCACCAACAAACUGUGCAUUAAAGGUU (((((((((((((((..((((...................)))).......(((.(((((.....((((((......))))))..))))))))........)))))).)))..)))))). ( -21.31) >DroSec_CAF1 2633 119 + 1 ACCUUUUGCCAGAUUAAGCUUAGUUACUACAAACUAAUUAAAGCAAUA-AGCAUCUUGCAAUCUUCUUAAGAGCUACCUUGAUUAUGCAAAUGCCACCAUCAAACUGUGCUUUAAAGGUU ((((((.(((((.....(((((((((........))))).))))....-.((((.(((((......(((((......)))))...)))))))))..........))).))...)))))). ( -25.00) >DroSim_CAF1 3054 120 + 1 ACCUUUUGCCAGAUUAAGCUUAGUUACUACAAACUAAUUAAAGCAAUAAAGCAUCUUGCAAUCUUCUUAAGAGCUACCUUGAUUAUGCAAAUGCCGCCAACAAACUGUGCUUCAAAGGUU ((((((.(((((.....(((((((((........))))).))))......((((.(((((......(((((......)))))...)))))))))..........))).))...)))))). ( -24.30) >DroEre_CAF1 2783 116 + 1 GUC-UUUGUUAGUUUAAGCUUAGUU---ACAAACUAAUUAAAGCAGUAAGACAUCUUGCAAUCUGUUUAAGAACAACCUUGAUUAUGCAAAUGCCGCGAACAAACUGUGCAUUAAAGGUU .((-((...(((.....((((((((---(.....))))).)))).(((((....)))))...)))...))))..((((((....(((((..((.......)).....)))))..)))))) ( -21.20) >consensus ACCUUUUGCCAGAUUAAGCUUAGUUACUACAAACUAAUUAAAGCAAUAAAACAUCUUGCAAUCUUCUUAAGAGCUACCUUGAUUAUGCAAAUGCCACCAACAAACUGUGCAUUAAAGGUU ((((((.((((((((..(((((((((........))))).))))......((((.(((((......(((((......)))))...))))))))).......)))))).))...)))))). (-17.92 = -18.80 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:22 2006