Locus 10162

Sequence ID 3R_DroMel_CAF1
Location 27,292,059 – 27,292,152
Length 93
Max. P 0.562401
window16168

overview

Window 8

Location 27,292,059 – 27,292,152
Length 93
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 85.52
Mean single sequence MFE -26.74
Consensus MFE -16.36
Energy contribution -18.88
Covariance contribution 2.52
Combinations/Pair 1.14
Mean z-score -2.17
Structure conservation index 0.61
SVM decision value 0.06
SVM RNA-class probability 0.562401
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27292059 93 + 27905053
UGUAAUUCGGGGCUCUUUUUACCGAAUUCUUACGGGUUC-------------UCCUGAUAAUCAAAUUAUAUUUUUGUUACAAAAAAAACUUCCAGAUUGCAUGAU
((((((..((((.(.(((((...((((((....))))))-------------...((.(((.((((.......)))))))))))))).).))))..)))))).... ( -14.10)
>DroSec_CAF1 64714 104 + 1
UGUAAUUCGGGGCUCUUUUUACCGAAUUCUUACGGUUUCGCCUCAGAAGA-CUCCUGAGAAUGGAAUUAUCUUUUUGGUA-AAAAAGAACUUCCAGAUUGCAUGGU
((((((..((((.(((((((((((((.....(..((((((.(((((....-...)))))..))))))..)...)))))).-))))))).).)))..)))))).... ( -28.80)
>DroSim_CAF1 66371 103 + 1
UGUAAUUCGGGGCUCUUUUUACCGAAUUCUUACGGUUUCGCCUCAGA-GA-CUCCUGAGAAUGGAAUUAUCUUUUUGGUA-AAAGAGAACUUCCAGAUUGCAUGGU
((((((..(((.(((((((.((((((((((((.((((((......))-))-).).)))))))(((....)))..))))))-))))))....)))..)))))).... ( -30.90)
>DroEre_CAF1 67615 105 + 1
UGCAAUUUGGGGCUCUUUUUAACGAAUUCCUACAGGUUUGCCUCAGAAGAGCUCCUGAGAAUGAAAUUAUCUUUUUGUUA-AAAAAGAACUUCCAGAUUGCAUGGU
((((((((((((.(((((((((((((...((.((((...((.((....)))).))))))...((.....))..)))))).-))))))).).))))))))))).... ( -30.30)
>DroYak_CAF1 71427 105 + 1
UGUAAUUUGGGGCUCUUUUUACCGAAUUCUUACAGGUUUGCCUCAGAAGAGCUCCUCAGAAUGAAAUUAUCUUUUUGUUA-AAAAAGAAUUUUCAGAUUGCGCGGU
.((((((((((((((((((...((((((......))))))....))))))))))).......((((...(((((((....-)))))))..)))))))))))..... ( -29.60)
>consensus
UGUAAUUCGGGGCUCUUUUUACCGAAUUCUUACGGGUUCGCCUCAGAAGA_CUCCUGAGAAUGAAAUUAUCUUUUUGUUA_AAAAAGAACUUCCAGAUUGCAUGGU
(((((((.((((.((((((...(((((((....)))))))....)))))).))))......(((((...(((((((.....)))))))..)))))))))))).... (-16.36 = -18.88 +   2.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:10 2006