Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,206,973 – 3,207,069 |
Length | 96 |
Max. P | 0.523225 |
Location | 3,206,973 – 3,207,069 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.65 |
Mean single sequence MFE | -18.65 |
Consensus MFE | -11.00 |
Energy contribution | -11.67 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.59 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3206973 96 + 27905053 CCCGGGCAUAAAAAAGG----------------GGAAAAGAAAAAAGAAUUAUUUCAAGCAGUUUCGAAGCCAUAAAAAACUGCAUUUGGCAGCCGUUGCCAAAAC-CUAUAA (((............))----------------)............(((....)))..(((((((............))))))).((((((((...))))))))..-...... ( -18.80) >DroVir_CAF1 34244 112 + 1 CCCAGCUCUAAAAAAAUAGCAAAAAAAAACGCAGCAAUGAGAACAAAAAGUAUUUGAAGCAGCUUCGAAGCCAUAAAAAACUGCAUUUGGCAGUUGUCGCCAA-AGGCAAACU ....(((.......................((((...((....))....(..(((((((...)))))))..)........)))).((((((.......)))))-))))..... ( -18.10) >DroGri_CAF1 27923 100 + 1 CCCAGCAAUAAAAA-----------AAAUA--UGGAAAGAGAACAAAAAGUAUUUCAAACAGCUUCGAAGCCAUAAAAAACUGCAUUUGGCAGUUGUCGCCAAAAAGCAAACU ....((........-----------...((--((....((((((.....)).)))).....(((....)))))))...((((((.....))))))...........))..... ( -14.30) >DroSec_CAF1 26362 96 + 1 CCCGGGCAUAAAAAAGG----------------GGAAAAGGAAAAAGAAUUAUUUCAAGCAGUUUCGAAGCCAUAAAAAACUGCAUUUGGCAGCCGUUGCCAAAAC-CUAUAU (((............))----------------)....(((.....(((....)))..(((((((............))))))).((((((((...)))))))).)-)).... ( -21.30) >DroSim_CAF1 33203 96 + 1 CCCGGGCAUAAAAAAGG----------------GGAAAAGGAAAAAGAAUUAUUUCAAGCAGUUUCGAAGCCAUAAAAAACUGCAUUUGGCAGCCGUUGCCAAAAC-CUAUAU (((............))----------------)....(((.....(((....)))..(((((((............))))))).((((((((...)))))))).)-)).... ( -21.30) >DroEre_CAF1 25878 95 + 1 CCCGGGCAUAAAAAAGG----------------GGA-AAGCAAAAAGAAUUAUAUCAAGCAGUUUCGAAGCCAUAAAAAACUGCAUUUGGCAGCCGUUGCCAAAAC-CUAUAU (((............))----------------)..-.....................(((((((............))))))).((((((((...))))))))..-...... ( -18.10) >consensus CCCGGGCAUAAAAAAGG________________GGAAAAGGAAAAAGAAUUAUUUCAAGCAGUUUCGAAGCCAUAAAAAACUGCAUUUGGCAGCCGUUGCCAAAAC_CUAUAU ..........................................................(((((((............))))))).((((((.......))))))......... (-11.00 = -11.67 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:23 2006