Locus 10158

Sequence ID 3R_DroMel_CAF1
Location 27,288,963 – 27,289,060
Length 97
Max. P 0.573446
window16161

overview

Window 1

Location 27,288,963 – 27,289,060
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 91.03
Mean single sequence MFE -21.28
Consensus MFE -17.42
Energy contribution -18.10
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.36
Structure conservation index 0.82
SVM decision value 0.08
SVM RNA-class probability 0.573446
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27288963 97 + 27905053
AGUAGUCCCUAGGUGGCGCUAGCCAAGCGCCAAAUUCAAACGGAGCAACCGUUUGCCUUAAGUUUUCAAAUAUUUCAUUUACGCAUUAUUACACACC
.(((((.......(((((((.....)))))))....(((((((.....)))))))................................)))))..... ( -22.50)
>DroSec_CAF1 61685 97 + 1
AGUAGUCCCUAGGUGGCGCUAGCCAAGCGCCAAAUUCAAACGGAGCAACCGUUUGCCUUAAGUUUUCAAAUAUUUAAUUUACGCAUUAUUACACACC
.(((((.....(((((((((.....)))))))....(((((((.....)))))))))((((((........))))))..........)))))..... ( -23.90)
>DroSim_CAF1 62548 97 + 1
AGUAGUCCCUAGGUGGCGCUAGCCAAGCGCCAAAUUCAAACGGAGCAACCGUUUGCCUUAAGUUUUCAAAUAUUUCAUUUACGCAUUAUUACACACC
.(((((.......(((((((.....)))))))....(((((((.....)))))))................................)))))..... ( -22.50)
>DroEre_CAF1 64608 97 + 1
GCAAGUCGCAAGGUGGCGCUAGCUACGCGCCAAAUUCAAACAGAGCAACCCUUUGCCUUAAGUUUUAAAACAGUUCAUUUACGCAUUAUUACACACC
((.....((((((((((((.......))))))..(((.....))).....)))))).....(((....)))...........))............. ( -18.50)
>DroYak_CAF1 68012 97 + 1
GCUAGUCGCAAGGUGGCGCUAGCUAGGCGCCAAAUUCAAACAGAGCAACCGUUUGCCUUAGUAUUUAAAAUAGUUCAUUUACACAUUAUUACACACC
(((((..(((.(((((((((.....))))))...(((.....)))..)))...))).)))))................................... ( -19.00)
>consensus
AGUAGUCCCUAGGUGGCGCUAGCCAAGCGCCAAAUUCAAACGGAGCAACCGUUUGCCUUAAGUUUUCAAAUAUUUCAUUUACGCAUUAUUACACACC
..........((((((((((.....)))))))....(((((((.....))))))))))....................................... (-17.42 = -18.10 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:04 2006