Locus 10157

Sequence ID 3R_DroMel_CAF1
Location 27,281,798 – 27,281,918
Length 120
Max. P 0.973202
window16160

overview

Window 0

Location 27,281,798 – 27,281,918
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.11
Mean single sequence MFE -33.88
Consensus MFE -29.54
Energy contribution -29.48
Covariance contribution -0.05
Combinations/Pair 1.16
Mean z-score -2.40
Structure conservation index 0.87
SVM decision value 1.71
SVM RNA-class probability 0.973202
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27281798 120 + 27905053
CGAUAUUGAACAGUUCUCUACGGUGAAGGGCGUCAAUAUCGACGAAUCCGACACGAAUUUCUAUACGAAAUUCAACACAGGCUCCGUGUCCAUUUCCUGGCAGAACGAGAUGAUGGAGAC
(((((((((...((((((......).))))).))))))))).....(((((((((((((((.....)))))))......(....))))))((((((.(......).))))))..)))... ( -35.60)
>DroVir_CAF1 66583 120 + 1
CGAUAUUGAACAGUUCUCAACUGUGAAGGGUGUCAAUAUCGACGAAUCCGAUACGAAUUUUUAUACGAAAUUCAAUACGGGCUCUGUAUCCAUUUCAUGGCAAAAUGAAAUGAUGGAAAC
(((((((((.((.(..(((....)))..).)))))))))))..((..(((....(((((((.....)))))))....)))..))....((((((((((......))))...))))))... ( -33.40)
>DroGri_CAF1 77810 120 + 1
CGAUAUUGAACAGUUCUCGACCGUUAAGGGCGUCAAUAUCGACGAGUCCGAUACGAAUUUUUAUACGAAAUUCAAUACGGGCUCCGUAUCGAUUUCAUGGCAAACUGAAAUGAUGGAAAC
(((((((((...(((((..(...)..))))).)))))))))..(((((((....(((((((.....)))))))....)))))))..((((.((((((.(.....)))))))))))..... ( -35.30)
>DroWil_CAF1 56707 120 + 1
CGAUAUUGAACAGUUCUCCACAGUCAAAGGCGUCAAUAUCGAUGAAUCCGACACCAAUUUCUAUACGAAAUUCAAUACUGGUUCUGUGUCCAUUUCAUGGCAGAAUGAAAUGAUGGAAAC
(((((((((...((..(.........)..)).))))))))).....((((((((.((((((.....))))))((....)).....)))))((((((((......))))))))..)))... ( -28.00)
>DroMoj_CAF1 62719 120 + 1
CGAUAUUGAACAGUUCUCCACUGUGAAGGGCGUCAAUAUCGACGAGUCCGAUACGAAUUUUUAUACGAAAUUCAAUACGGGCUCUGUAUCCAUUUCAUGGCAAAAUGAAAUGAUGGAGAC
(((((((((...(((((.(.....).))))).)))))))))..(((((((....(((((((.....)))))))....)))))))....((((((((((......))))...))))))... ( -38.90)
>DroAna_CAF1 59516 120 + 1
CGAUAUUGAACAGUUCUCCACCGUGAAGGGCGUCAAUAUCGAUGAGUCCGAUACGAAUUUCUACACGAAAUUCAAUACGGGUUCCGUGUCCAUAUCCUGGCAGAAUGAAAUGAUGGAAAC
(((((((((...(((((.(.....).))))).)))))))))..((..(((....(((((((.....)))))))....)))..)).((.(((((.......(.....).....))))).)) ( -32.10)
>consensus
CGAUAUUGAACAGUUCUCCACCGUGAAGGGCGUCAAUAUCGACGAAUCCGAUACGAAUUUCUAUACGAAAUUCAAUACGGGCUCCGUAUCCAUUUCAUGGCAAAAUGAAAUGAUGGAAAC
(((((((((...(((((.........))))).))))))))).....(((((((((((((((.....)))))))......(....))))))((((((((......))))))))..)))... (-29.54 = -29.48 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:03 2006