Locus 10156

Sequence ID 3R_DroMel_CAF1
Location 27,278,009 – 27,278,099
Length 90
Max. P 0.761330
window16159

overview

Window 9

Location 27,278,009 – 27,278,099
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 90.87
Mean single sequence MFE -25.77
Consensus MFE -22.90
Energy contribution -23.57
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.89
SVM decision value 0.50
SVM RNA-class probability 0.761330
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27278009 90 + 27905053
CAAAGGAUGUAGGACAUAAAUUCGUUGCUAUUUCUUUGGCCACGACUGUGGCUAUGCGAUGGGCAUAUUAACCCAGUUUCCUUGACUGGC
(((((((.(((((((........))).)))))))))))(((((....)))))(((((.....))))).....((((((.....)))))). ( -27.50)
>DroSec_CAF1 50881 83 + 1
UA-------UAGGGAAUAAAUUCGUUGCUAUUUCUUUGGCCACGACCGUGGCUCUGCGAUGGGCAUAUUAACCCAGUUUCCUUGACUGGC
..-------..(..((((..((((((((.........((((((....))))))..))))))))..))))..)((((((.....)))))). ( -24.40)
>DroSim_CAF1 51599 83 + 1
UA-------UAGGGAAUAAAUUCGUUGCUAUUUCUUUGGCCACGACUGUGGCUAUGCGAUGGGCAUAUUAACCCAGUUUCCUUGACUGGC
..-------..(..((((..((((((((........(((((((....))))))).))))))))..))))..)((((((.....)))))). ( -25.40)
>consensus
UA_______UAGGGAAUAAAUUCGUUGCUAUUUCUUUGGCCACGACUGUGGCUAUGCGAUGGGCAUAUUAACCCAGUUUCCUUGACUGGC
...........(..((((..((((((((........(((((((....))))))).))))))))..))))..)((((((.....)))))). (-22.90 = -23.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:02 2006