Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,276,812 – 27,276,910 |
Length | 98 |
Max. P | 0.586545 |
Location | 27,276,812 – 27,276,910 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.88 |
Mean single sequence MFE | -19.38 |
Consensus MFE | -14.47 |
Energy contribution | -14.13 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.20 |
Mean z-score | -1.79 |
Structure conservation index | 0.75 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27276812 98 + 27905053 CUUAUUGAUUGGUUUUAAUUAGGAAAGCCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAUGUUUUUAUAGCACUUUUCCUC--CAC-----AUC-----CAC- ......((((((.....(((((..((((((((....((((.......))))))))))))..))))).((((.....))))........)--)).-----)))-----...- ( -19.60) >DroPse_CAF1 80663 102 + 1 CUUAUUGAUUGGUUUUAAUUAGAAAAACCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UUCUU--UGCGCCAUUUC-----CGC- ....(((((.((((((.......))))))))))).(((((.......)))))(((((.......((((....)))).(((...-.....--))))))))...-----...- ( -19.50) >DroWil_CAF1 50358 96 + 1 CUUGUUGAUUGGUUUUAAUUAGAGGAACCAUCGACCACAAAUUAGCCUUGCCAUGGCUUCAUUAAUAAGUUUUUAUUGCUCUU-UUUUU--UGU-----GUC-----GU-- ...((((((.((((((.......))))))))))))((((((..((((.......))))....((((((....)))))).....-...))--)))-----)..-----..-- ( -19.40) >DroYak_CAF1 54909 104 + 1 CUUAUUGAUUGGUUUUAAUUAGGAAAGCCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UCCACUCUCC-----AUCCCACUCAC- .....(((.(((.....(((((..((((((((....((((.......))))))))))))..)))))..(((.....)))....-..........-----...))).))).- ( -20.90) >DroAna_CAF1 54232 98 + 1 CUUAUUGAUUAGUUUUAAUUAGAAAAGCCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UUCUU--UUU-----CCC-----GAUU ......((..(((....(((((..((((((((....((((.......))))))))))))..)))))..(((.....)))))).-.))..--...-----...-----.... ( -17.40) >DroPer_CAF1 76966 102 + 1 CUUAUUGAUUGGUUUUAAUUAGAAAAACCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UUCUU--UGCGCCAUUUC-----CGC- ....(((((.((((((.......))))))))))).(((((.......)))))(((((.......((((....)))).(((...-.....--))))))))...-----...- ( -19.50) >consensus CUUAUUGAUUGGUUUUAAUUAGAAAAACCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU_UUCUU__UGC_____AUC_____CAC_ ((((((((((((((((.......))))))).............((((.......))))..))))))))).......................................... (-14.47 = -14.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:02 2006