Locus 10154

Sequence ID 3R_DroMel_CAF1
Location 27,272,097 – 27,272,202
Length 105
Max. P 0.920829
window16157

overview

Window 7

Location 27,272,097 – 27,272,202
Length 105
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 86.82
Mean single sequence MFE -23.76
Consensus MFE -17.08
Energy contribution -19.00
Covariance contribution 1.92
Combinations/Pair 1.17
Mean z-score -2.49
Structure conservation index 0.72
SVM decision value 1.14
SVM RNA-class probability 0.920829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27272097 105 - 27905053
AAAAGAAUAUUGGUAAACAUU---UUUGCAGAGCAAUGCAAAGCGUACGGAAACAGACAAAACUUUGCUCUGCAUCGAAAUUUACAAGG---CGAACUACGAGUAUUUAAU
....(((((((.(((......---..((((((((((.((...))((..(....)..))......))))))))))(((............---)))..))).)))))))... ( -26.10)
>DroSec_CAF1 45098 108 - 1
AAAAGAAUAUUGGUAAACAUUUUUUUUGCAGAGCAAUGCAAAGUGCACGGAAACAGACAAAACUAUGCUCUGCAUCGGAAUCUACAAGG---CGAACUACGAGUAUUUAAU
....(((((((.(((...........(((((((((.(((.....))).(....)...........)))))))))(((............---)))..))).)))))))... ( -27.30)
>DroSim_CAF1 45313 106 - 1
AAAAGAAUAUUGGUAAACAUUUUUUUUGCAGAGCAAUGCAAAGAGCACGGAAACAGACA--ACUUUGCUCUGCAUCGGAAUUUACAAGG---CGAACUACGAGUAUUUAAU
....(((((((.(((...........(((((((((((((.....))).(....).....--...))))))))))(((............---)))..))).)))))))... ( -27.60)
>DroEre_CAF1 47831 102 - 1
AAAAGAAUAUUGGUAAAUAUU---UUUGCAGAGCAGUGCAAAGAGCAAGGAAACAGACAGAACUUUACUCUGCAUCGAAAUUUACAAGACGACGAAC------UAUUUAAU
............((((((.((---..(((((((...(((.....))).(....).............)))))))..)).))))))............------........ ( -20.10)
>DroYak_CAF1 48933 99 - 1
AAAAGAAUAUUGGUAAAUAUU---UUUGCAGCGCAGUGCAAAGAGCAUGGAAACAGACAGAACUUUACUCUGCAUUGAAAUUUACAAGA---CGAAC------UAUUUAAU
............((((((.((---..(((((.(..((((.....))))(....).............).)))))..)).))))))....---.....------........ ( -17.70)
>consensus
AAAAGAAUAUUGGUAAACAUU___UUUGCAGAGCAAUGCAAAGAGCACGGAAACAGACAAAACUUUGCUCUGCAUCGAAAUUUACAAGG___CGAACUACGAGUAUUUAAU
....(((((((.(((...........(((((((((((((.....))).(....)..........))))))))))(((...((.....))...)))..))).)))))))... (-17.08 = -19.00 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:01 2006