Locus 10153

Sequence ID 3R_DroMel_CAF1
Location 27,270,806 – 27,270,896
Length 90
Max. P 0.500000
window16156

overview

Window 6

Location 27,270,806 – 27,270,896
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 84.38
Mean single sequence MFE -25.33
Consensus MFE -21.83
Energy contribution -22.17
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.86
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27270806 90 - 27905053
CAUCAAAGGCUGCUGUUGCCGCCUUUUGAAAGGUCCUCGAAAGAGACCCAAGAAGCGUAUCCUUCAGGCGCUCUGCUUCGUUCCGCUCCU
..((((((((.((....)).))).)))))..((..(((....)))..))..((((((...((....)).....))))))........... ( -28.10)
>DroSec_CAF1 43856 76 - 1
CAUCAAAGGCUGCUGUUGCCGCCUAUUGAAAGGUCCUCGAGAGCGACCCCAGAAGCGUAUCCUUCAGCCGCUCUGC--------------
..((((((((.((....)).)))).))))..((((((....)).)))).((((.(((...........))))))).-------------- ( -23.20)
>DroSim_CAF1 44048 76 - 1
CAUCAAAGGCUGCUGUUGCCGCCUAUUGAAAGGUCCUCGAGAGCGACCCCAGGAGCGUAUCCUUCAGCCGCUCUGC--------------
..((((((((.((....)).)))).))))..((((((....)).))))...((((((...........))))))..-------------- ( -24.70)
>consensus
CAUCAAAGGCUGCUGUUGCCGCCUAUUGAAAGGUCCUCGAGAGCGACCCCAGAAGCGUAUCCUUCAGCCGCUCUGC______________
..((((((((.((....)).)))).))))..((((((....)).)))).(((.((((...........)))))))............... (-21.83 = -22.17 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:00 2006