Locus 10152

Sequence ID 3R_DroMel_CAF1
Location 27,265,095 – 27,265,190
Length 95
Max. P 0.724837
window16155

overview

Window 5

Location 27,265,095 – 27,265,190
Length 95
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 93.99
Mean single sequence MFE -21.29
Consensus MFE -17.31
Energy contribution -19.31
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.81
SVM decision value 0.41
SVM RNA-class probability 0.724837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27265095 95 + 27905053
----ACUUCUGAUAUUUGUUUACGCUCAUCUCGCCUGGCUCCAGCUCUAAUUUAUUUUUAUUAUGUUGGAUUCUUGUUUUAAUUUGCCAGCGGGAGUGC
----...................((...((((((.((((((((((..((((........)))).))))))...............))))))))))..)) ( -22.46)
>DroSec_CAF1 38238 95 + 1
----ACUUCUGAUAUUUGUUUACGCUCCUCUCACCUGGCUCCAGCUCUAAUUUAUUUUUAUUAUGUUGGAUUCUUGUUUUAAUUUGCCAGCGGGUGGGC
----...................((.((.(((..(((((((((((..((((........)))).))))))...............))))).))).)))) ( -20.16)
>DroSim_CAF1 38330 95 + 1
----ACUUCUGAUAUUUGUUUACGCUCCUCUCGCCCGGCUCCAGCUCUAAUUUAUUUUUAUUAUGUUGGAUUCUUGUUUUAAUUUGCCAGCGGGUGGGC
----...................((.((.(((((..(((((((((..((((........)))).))))))...............))).))))).)))) ( -22.26)
>DroEre_CAF1 40667 99 + 1
AUAUACUUUUGAUAUUUGUUUACGCUCCUCUCGCCUGGCUCCCGCUCUAAUUUAUUUUUAUUAUGUUGGAUUCUUGUUUUAAUUUGCCAGCGGGAGUGC
.......................((..(((((((.(((((((.((..((((........)))).)).)))...............))))))))))).)) ( -20.26)
>consensus
____ACUUCUGAUAUUUGUUUACGCUCCUCUCGCCUGGCUCCAGCUCUAAUUUAUUUUUAUUAUGUUGGAUUCUUGUUUUAAUUUGCCAGCGGGAGGGC
.......................((.((((((((.((((((((((..((((........)))).))))))...............)))))))))))))) (-17.31 = -19.31 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:59 2006