Locus 10151

Sequence ID 3R_DroMel_CAF1
Location 27,254,683 – 27,254,776
Length 93
Max. P 0.994293
window16154

overview

Window 4

Location 27,254,683 – 27,254,776
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.51
Mean single sequence MFE -22.60
Consensus MFE -18.48
Energy contribution -18.64
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -2.57
Structure conservation index 0.82
SVM decision value 2.47
SVM RNA-class probability 0.994293
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27254683 93 + 27905053
CAAAUGACACCAGUCCAGCAUACUGGACAUGGAUUAUUUGCUCCAGAUUCGUUCGUGCUGCAAUCUGGUUCUUCACA--UAUUUCAUAGAAUAAA
(((((((..(((((((((....)))))).))).)))))))..(((((((.((.......))))))))).........--................ ( -24.40)
>DroSec_CAF1 27884 93 + 1
CAAAUGACACCAGUCCAGCAUACUGGACAUGGAUUACUUGCUCCAGAUUCGUUCGUGCUACAAUCUGGUUCCUCACA--UAUUUCAUAGAAUAAA
...((((..(((((((((....)))))).)))..........(((((((.((.......))))))))).........--....))))........ ( -22.60)
>DroSim_CAF1 27619 93 + 1
CAAAUGACACCAGUCCAGCAUACUGGACAUGGAUUACUUGCUCCAGAUUCGUUCGUGCUACAAUCUGGUUCUUCACA--UAUUUCAUAGAAUAAA
...((((..(((((((((....)))))).))).......(..(((((((.((.......)))))))))..)......--....))))........ ( -22.80)
>DroEre_CAF1 28423 88 + 1
CAAAUGACACCAGUCCGGCAUACUGGACAGGGAUUACUUGCUCCAGAUUC----GUGCUACAAUCUGGU-CUACACA--UAUUUCAUAGAAUAAA
........(((((...(((((.(((((((((.....)))).)))))....----))))).....)))))-.......--................ ( -21.20)
>DroYak_CAF1 29711 91 + 1
CAAAUGACACCAGUCCGGCAUACUGGACAGGGAUUACUUGCUCCAGAUUC----GUGCUACAAUCUGGUUCUACACAUAUAUUUCAUAGCAUAAA
.....((.(((((...(((((.(((((((((.....)))).)))))....----))))).....)))))))........................ ( -22.00)
>consensus
CAAAUGACACCAGUCCAGCAUACUGGACAUGGAUUACUUGCUCCAGAUUCGUUCGUGCUACAAUCUGGUUCUUCACA__UAUUUCAUAGAAUAAA
...((((..(((((((((....)))))).)))..........(((((((............)))))))...............))))........ (-18.48 = -18.64 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:58 2006