Locus 10150

Sequence ID 3R_DroMel_CAF1
Location 27,254,429 – 27,254,526
Length 97
Max. P 0.811136
window16153

overview

Window 3

Location 27,254,429 – 27,254,526
Length 97
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 79.82
Mean single sequence MFE -36.88
Consensus MFE -21.94
Energy contribution -23.17
Covariance contribution 1.22
Combinations/Pair 1.15
Mean z-score -2.06
Structure conservation index 0.59
SVM decision value 0.65
SVM RNA-class probability 0.811136
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27254429 97 - 27905053
GCAUGACAGCUAUGCGGUGUGGGUUGGAAAACAAGUG------------AAACUGGUCGAGAUUGGUCUUGAUUGGUUCUC-----GGUUUCCGUUCCCC-----CCACCUUUUCGCCG
(((((.....)))))((((.(((.((((((....(.(------------((.(..(((((((....)))))))..)))).)-----..))))))...)))-----.))))......... ( -35.60)
>DroSec_CAF1 27626 96 - 1
GCAUGACAGCUAUGCGGUGUGGGUUGGAAAACAAGUG------------AGACUGGUCGAGAUUGGUCUUGAUUGGUUCUC-----GGUUUCCGUUCC-C-----CCACCUUUUCGCCG
(((((.....)))))((((.(((.((((((.....((------------((((..(((((((....)))))))..).))))-----).))))))..))-)-----.))))......... ( -38.20)
>DroSim_CAF1 27362 96 - 1
GCAUGACAGCUAUGCGGUGUGGGUUGGAAAACAAGUG------------AGACUGGUCGAGAUUGGUCUUGAUUGGUUCUC-----GGUUUCCGUUCC-C-----CCACCUUUUCGCCG
(((((.....)))))((((.(((.((((((.....((------------((((..(((((((....)))))))..).))))-----).))))))..))-)-----.))))......... ( -38.20)
>DroEre_CAF1 28164 97 - 1
GCAUGACAGCUAUGCGGUGUGGGUUGGAAAACAAGUG------------AGACUGGUCGAGAUUGGUCUUGAUUGGUUCUC-----GGUUGCUGUUCCCC-----CCACCUUAUCGCCA
(((((.....)))))((((.(((..((((..(((.((------------((((..(((((((....)))))))..).))))-----).)))...))))))-----)))))......... ( -40.90)
>DroYak_CAF1 29436 107 - 1
GCAUGACAGCAAUGCGGUGUGGGUUGGAAAACAAGUG------------AGACUGGUCGAGAUUGCUCUUGAUUGGUUCCCUCUGCUGUUGCUGUUUCCCCGUUUCCACCUUAUCGCCA
((((.......))))((((.((((.(((((...((.(------------..((..(((((((....)))))))..))..)))..((....))..........)))))))))...)))). ( -35.20)
>DroAna_CAF1 24931 111 - 1
GCAUGACAGCAACGCGGUAUCAGGAGGAAAACAAGGAGACUGUGCUUGUUGACUGGUCGAGAUUGGACUUGAUUGGGUUU------GGUUUUUGUCUGUCC--UUCCCCCCGGACAGGA
......((((((((((((.((.(........)...)).)))))).)))))).(..((((((......))))))..)....------........(((((((--........))))))). ( -33.20)
>consensus
GCAUGACAGCUAUGCGGUGUGGGUUGGAAAACAAGUG____________AGACUGGUCGAGAUUGGUCUUGAUUGGUUCUC_____GGUUUCCGUUCCCC_____CCACCUUUUCGCCA
(((((.....)))))((((.((((.((.......................(((..(((((((....)))))))..)))........((........)).......))))))...)))). (-21.94 = -23.17 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:57 2006