Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,206,220 – 3,206,340 |
Length | 120 |
Max. P | 0.703650 |
Location | 3,206,220 – 3,206,340 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.94 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -26.08 |
Energy contribution | -26.20 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.72 |
Structure conservation index | 0.81 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3206220 120 + 27905053 CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCGAGCUCAUGUGUCAGCUGAGAAAAUGCAUAUUAUUAAAUCCGAUCAAUGUGAUGCUGUCUUCCAUCACAGUAUUACUGCCU .....(((((.((((((..((......))....((((....))))..)))))).)))))............................((((((((((........))))))))))..... ( -29.70) >DroSec_CAF1 25598 120 + 1 CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGUUCGAGCUCAUGUGUCAGCUGAGAAAAUGCAUAUUAUUAAAUCCGAUCAAUGUGAUGGUGUCUCCCAUCGAAGUAUUACUGCCU .........(((((((((.(.......(((((.(((((..(....(((((.((..........)))))))..)..))))))))))....(((((......)))))).))))))))).... ( -27.60) >DroSim_CAF1 32454 120 + 1 CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCGAACUCAUGUGUCAGCUGAGAAAAUGCUUAUUAUUAAAUCCGAUCAAUGUGAUGGUGUCUCCCAUCGGAGUAUUACUGCCU .........(((((((((((.((((((((((..((((.....((((.((....)))))).....)))))))).))))))..........(((((......)))))))))))))))).... ( -34.40) >DroEre_CAF1 25165 120 + 1 UCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCCAACUCAUGUGUCCGCUGAGAAAGUGCGUAUUAUUAAAUCUGAUCAAUGUGAUGGGGUCUCCCGUCAUAUUAUCACUGUCU .........((((((....((((((((((((..(.(((....((((.((....))))))..))).)..)))).))))))))...(((((((((((....))))))))))))))))).... ( -36.40) >consensus CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCGAACUCAUGUGUCAGCUGAGAAAAUGCAUAUUAUUAAAUCCGAUCAAUGUGAUGGUGUCUCCCAUCAAAGUAUUACUGCCU .........((((((((....((((((((((....((.....((((.((....)))))).....))..)))).)))))).......((((((((......)))))))))))))))).... (-26.08 = -26.20 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:22 2006