| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,248,885 – 27,249,005 |
| Length | 120 |
| Max. P | 0.599473 |
| Location | 27,248,885 – 27,249,005 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.99 |
| Mean single sequence MFE | -30.92 |
| Consensus MFE | -25.38 |
| Energy contribution | -25.78 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27248885 120 - 27905053 CCAAGCAGAAAUUACAGCAUCGACUAAUGGCCUGGAUAAAUUGGUUUGGGACUAUGCCAACGGCCAUGUUCCCUGCACCCAAUUGACGCCAUUUUGGCCAACUUUGUUGCACUCCUUAUU ................(((.(((....((((((((...((((((...((((.((((((...)).)))).)))).....))))))....)))....)))))...))).))).......... ( -31.60) >DroSec_CAF1 22084 120 - 1 CCAAGCAGAAAUUACAGCACCUACUAAUGGCCUGGAUAAAUUGGUUUGGGACUAUGCCAACGGCCAUGUUCCCUGCACCCAAUUGACGCCAUUUUGGCCAACUUUGUUGCACUCAUUAUU ................(((.(......((((((((...((((((...((((.((((((...)).)))).)))).....))))))....)))....))))).....).))).......... ( -29.80) >DroSim_CAF1 22192 120 - 1 CCAAGCAGAAAUUACAGCACCGACUAAUGGCCUGGAUAAAUUGGUUUGGGACUAUGCCAGCGGCCAUGUUCCCUGCACCCAAUUGACGCCAUUUUGGCCAACUUUGUUGCACUCAUUAUU ................(((.(((....((((((((...((((((...((((.((((((...)).)))).)))).....))))))....)))....)))))...))).))).......... ( -31.50) >DroEre_CAF1 22286 117 - 1 CCAAGCAGAAAUUACAGCACUAACUAAUGGCCAGGGUAAAUUGGUUUGGGACUAUGCCAACGGUUAUGUUCCCUG---CCAUUUGACGCCAUUUUGACCAACUUUGUUGCACUCAUUAUU ....((((.................((((((.....(((((.(((..(((((...(((...)))...)))))..)---)))))))..)))))).............)))).......... ( -24.11) >DroYak_CAF1 22813 119 - 1 CCAAGCAGAAAUUGCAACACUAACUAAUGGCCAGGGUAAAUUGGUUUGGGACCAUGCCAACGGUUAUGUUCCCUGCA-CCAAUUGACGCCAUUUUGGCCAACUUUGUUGCACUCAUUAUU ............(((((((........((((((.(((.(((((((..((((.((((((...)).)))).))))...)-))))))...)))....))))))....)))))))......... ( -37.60) >consensus CCAAGCAGAAAUUACAGCACCAACUAAUGGCCUGGAUAAAUUGGUUUGGGACUAUGCCAACGGCCAUGUUCCCUGCACCCAAUUGACGCCAUUUUGGCCAACUUUGUUGCACUCAUUAUU ................(((.(((....((((((((...((((((...((((.((((((...)).)))).)))).....))))))....)))....)))))...))).))).......... (-25.38 = -25.78 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:56 2006