| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,247,736 – 27,247,827 |
| Length | 91 |
| Max. P | 0.958654 |
| Location | 27,247,736 – 27,247,827 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 72.86 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -9.86 |
| Energy contribution | -9.92 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27247736 91 - 27905053 UACCCUGCAAAUACCCAGUGCAUAAAAAUAAGGA-AACAACAACGGGCGAGCC-AAAUCUUUUGUAUGCAGCACAAAAGAAGCGAAAGCAGCG ..(((((((.........)))).........(..-..)......)))...((.-...((((((((.......)))))))).((....)).)). ( -20.90) >DroVir_CAF1 23932 74 - 1 ------------------AGCAUACACAUUGGAA-AACAACAACGGGCGAGCAAAAAUCUUUUGUAUGCACCACAAAAGAAGCGACUGCAGCG ------------------.((.............-.........(((((.(((((.....))))).))).)).........((....)).)). ( -12.40) >DroGri_CAF1 27215 71 - 1 ------------------AACA---ACAUUGGAA-AACAACAACGGUUGAGCAAAAAUCUUUUGUAUGCAGCACAAAAGAAGCGACAUCAGCA ------------------....---.(.(((...-.....))).)(((((.......((((((((.......)))))))).......))))). ( -12.54) >DroSim_CAF1 20787 91 - 1 UACCCUGCAAAUACCCAGUGCAUAAAAAUAAGGA-AACAACAACGGGCGAGCC-AAAUCUUUUGUAUGCAGCACAAAAGAAGCGAAAGCAGCG ..(((((((.........)))).........(..-..)......)))...((.-...((((((((.......)))))))).((....)).)). ( -20.90) >DroMoj_CAF1 22751 74 - 1 ------------------AACAUGCACAUUGGAA-AAAAACAACGGGCGAGCGAAAAUCUUUUGUAUGCAAUACAAAGGAUGCGACAACAGCA ------------------....(((.(.(((...-.....))).).))).(((...(((((((((((...))))))))))).)).)....... ( -14.90) >DroAna_CAF1 17992 93 - 1 CACCCUAAGGAUGCCCGUUACAUAAAAAUAAGGAGAACAACAACGGGUGAGCGAAAAUCUUUUGUAUGCAGCACAAAAGGAGCGAAAGCAGCA (((((...((....))(((.(..........)...)))......))))).((.....((((((((.......)))))))).((....)).)). ( -22.00) >consensus __________________AACAUAAAAAUAAGAA_AACAACAACGGGCGAGCAAAAAUCUUUUGUAUGCAGCACAAAAGAAGCGAAAGCAGCA ..................................................((.....((((((((.......)))))))).((....)).)). ( -9.86 = -9.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:52 2006