Locus 10144

Sequence ID 3R_DroMel_CAF1
Location 27,234,333 – 27,234,423
Length 90
Max. P 0.831345
window16145

overview

Window 5

Location 27,234,333 – 27,234,423
Length 90
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 75.05
Mean single sequence MFE -28.25
Consensus MFE -7.70
Energy contribution -9.65
Covariance contribution 1.95
Combinations/Pair 1.18
Mean z-score -2.69
Structure conservation index 0.27
SVM decision value 0.72
SVM RNA-class probability 0.831345
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27234333 90 - 27905053
CAUCAGCCCACCUGUCAUUGCUGUCUUGUAGAUUACCACCAGGCAUUUCUGUUUCUUCUUAUCGAA-----CUACGCCAGACUGGGCAGGUGGGU
.....(((((((((((....(((...(((((........((((....)))).(((........)))-----))))).)))....))))))))))) ( -29.90)
>DroSec_CAF1 12536 90 - 1
CACCAGCCCACCUGUCAUUGCUGUCUCGUAGAUUAGCACAAGGCAUUUCUGUUUCUUCUUAUCGAA-----CCACGACAGACUGGGCAGGUGGGU
.....(((((((((((....((((((((.(((..((((...........))))...)))...))).-----....)))))....))))))))))) ( -32.70)
>DroSim_CAF1 12630 90 - 1
CACCACCCCACCUGUCAUUGCCGUCUCGUAGAUUAGCACCAGGCAUUUCUGUUUCUUCUUAUCGAA-----CUACGACAGACUGGGCAGGUGGGU
......((((((((((..((((.....((......))....))))..((((((..(((.....)))-----....))))))...)))))))))). ( -30.30)
>DroEre_CAF1 12520 87 - 1
CAUCAGCCCACCUGUCAUUCCUGUCGUGUAUAUUAGCACCAGGAAUUUCUGUUUCUUCUUAUCAA-GG---CAACGGCAGACUGUGUACG----U
.....(..(((..((((((((((..((((......)))))))))))..(((((((((......))-))---.)))))..))).)))..).----. ( -21.50)
>DroYak_CAF1 12695 91 - 1
CAUCAGCCCACCUGUCAUUUCUGUCUUGUAGAUUAGCACCAGGCACUUCUGUUCCUUCUUAUCAAAGGCAGCGAUGGCAAACUGGGCAGG----U
.....(((((..(((((((.(((((((...(((.((....(((.((....)).))).)).))).))))))).)))))))...)))))...----. ( -31.40)
>DroAna_CAF1 11554 68 - 1
GAGCCACCCACCUGUCAGGGCUGUCUAGUUGAUUAGCACCUGGAAUUUUU----------AUCAAA-----CGG--------GGGGCAGG----U
..(((.(((.(((((((((((((((.....)).)))).))))((......----------.))..)-----)))--------))))..))----) ( -23.70)
>consensus
CAUCAGCCCACCUGUCAUUGCUGUCUUGUAGAUUAGCACCAGGCAUUUCUGUUUCUUCUUAUCAAA_____CGACGACAGACUGGGCAGG____U
..........((((((....(((((..((......))..((((....))))........................)))))....))))))..... ( -7.70 =  -9.65 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:50 2006