Locus 10142

Sequence ID 3R_DroMel_CAF1
Location 27,224,476 – 27,224,576
Length 100
Max. P 0.651752
window16143

overview

Window 3

Location 27,224,476 – 27,224,576
Length 100
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 75.80
Mean single sequence MFE -44.83
Consensus MFE -20.74
Energy contribution -20.46
Covariance contribution -0.28
Combinations/Pair 1.26
Mean z-score -1.94
Structure conservation index 0.46
SVM decision value 0.25
SVM RNA-class probability 0.651752
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27224476 100 - 27905053
CCUGUCAAUUCGGGAGCCACGUAUAGAGUGGUGCCGACCUUACCAGUACCAGUGCCGUCUUCCGCACUGGUUAUCUGGUUAACAGGCGCAGGCGCUGCG---U----
(((((....((((..(((((.......))))).))))....(((((.((((((((.(....).))))))))...)))))..)))))(((((...)))))---.---- ( -44.00)
>DroVir_CAF1 2634 107 - 1
CCCGUCAGCUCUGGUGCCACAUAGAGCGUGGUGCCCACUUUGCCCGUGCCAGUGCCAUCCUCCGUGAAGGUUACAUGCUGAGUGGUUGAAUGCGAUGGGUACUCAGC
((((((.((...((..((((.......))))..))(((((.((..(((((..(((........)))..)).)))..)).))))).......))))))))........ ( -35.00)
>DroPse_CAF1 2740 103 - 1
CCCGUCAGCUCGGGCGCCACGUACAGAGUGGUGCCCACUUUGCCCGUGCCCGUGCCGUCCUCGGUGCUGGUUAUAUGCUGCGCCGGCAAUUGCGACGGAUACU----
.(((((.((..(((((((((.......)))))))))...(((((.((((..(..(((....)))..).(((.....))))))).)))))..))))))).....---- ( -51.40)
>DroYak_CAF1 2651 100 - 1
CCCGUCAACUCGGGGGCCACGUAGAGAGUGGUGCCCACCUUACCAGUGCCAGUGCCGUCCUCCGCACUGGUUAUCUGGUGCACAGGCGCAGGUGCUGUG---U----
...........(((.(((((.......))))).))).....(((((.((((((((.(....).))))))))...)))))((((((.((....)))))))---)---- ( -44.90)
>DroAna_CAF1 2701 103 - 1
CCUGUUAGCUCGGGAGCCACAUACAGCGUUGUGCCCACUUUGCCAGUGCCCGUGCCAUCCUCGGCACUGGUGAUGUUGUGGGCGGGCACAUGGGCGGGGUACU----
(((....(((((.(.((((((........)))((((((.(..((((((((............))))))))..)....)))))).))).).))))).)))....---- ( -44.10)
>DroPer_CAF1 2738 103 - 1
CCCGUCAGCUCGGGCGCCACGUACAGAGUGGUGCCCACUUUGCCCGUGCCCGUGCCGUCCUCGGUGCUGGUUAUAUGCUGCGCCGGCAAUUGCGAUGGAUACU----
.(((((.((..(((((((((.......)))))))))...(((((.((((..(..(((....)))..).(((.....))))))).)))))..))))))).....---- ( -49.60)
>consensus
CCCGUCAGCUCGGGAGCCACGUACAGAGUGGUGCCCACUUUGCCAGUGCCAGUGCCGUCCUCCGCACUGGUUAUAUGCUGCGCAGGCAAAUGCGAUGGGUACU____
((((......)))).(((((.......)))))(((............(((.((((........)))).))).............))).................... (-20.74 = -20.46 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:48 2006