Locus 10141

Sequence ID 3R_DroMel_CAF1
Location 27,219,869 – 27,219,989
Length 120
Max. P 0.784779
window16142

overview

Window 2

Location 27,219,869 – 27,219,989
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.75
Mean single sequence MFE -39.99
Consensus MFE -33.72
Energy contribution -33.96
Covariance contribution 0.24
Combinations/Pair 1.15
Mean z-score -1.52
Structure conservation index 0.84
SVM decision value 0.57
SVM RNA-class probability 0.784779
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27219869 120 + 27905053
CAGGAUGGCCUGCUGCGGGAACCACUUACUAAUGAAAACAUUGGGGGGUUUUCCUGGCAGCAGUUCAUCUUCGAACUUCCAAACGAUUCGCUGUGGCAAGCUGGCGAAAGUCUCGAGCAA
..(((((..((((((((((((..(((..((((((....))))))..))).))))).)))))))..)))))((((...............(((......))).(((....))))))).... ( -46.10)
>DroSec_CAF1 33295 120 + 1
CAGGAUGGCCUGUUGCGGGAACCACUUACUAAUGAAAACAUUGGGGGGUUUUCCUGGCAGCUGCUCAUCCUCGAACUUCCAAAGGAUUCGCUGUGGCAAGCUGGCGAAAGUCUCGAGCAA
..(((((((..((((((((((..(((..((((((....))))))..))).))))).))))).)).)))))((((.((((((.((......)).))).)))..(((....))))))).... ( -43.50)
>DroSim_CAF1 34284 120 + 1
CAGGAUGGCCUGCUGCGGGAACCACUUACUUAUGAAAACAUUGGGGGGUUUUCCUGGCAGCUGCUCAUCUUCGAACUUCCAAAGGAUUCGCUGUGGCAAGCUGGCGAAAGUCUCGAGCAA
..(((((((..((((((((((..(((..((.(((....))).))..))).))))).))))).)).)))))((((.((((((.((......)).))).)))..(((....))))))).... ( -39.70)
>DroEre_CAF1 36715 120 + 1
CAGGAUGGCCUGCUGCGAGAACCAUUUACUAAUGAAAACAUUUGAUGGUUUUCCUGGCAGCUGCUCGUCCUCGAAUUUCCAAAGGAUUCGCUGUGGUAAGCUGGCAAAAGUCUCGAGUAA
.((((((((..(((((((((((((((....((((....)))).))))))))))...))))).)).)))))).((((((.....))))))(((......))).(((....)))........ ( -38.30)
>DroYak_CAF1 34514 120 + 1
CAGGAUGGACUGCUGCGAGAACCAUUUGCUUAUAAACACAUUCGAUGGUUUCCCCGGCAGCUGCUCGUCCUCGAAUUUCCAAAGAACUCGCUGUGGCAAACUGGCGAAUGUCUCGAGCAA
..(((((..(.((((((..(((((((.................)))))))..)...))))).)..)))))((((..(((....))).(((((((.....)).))))).....)))).... ( -32.33)
>consensus
CAGGAUGGCCUGCUGCGGGAACCACUUACUAAUGAAAACAUUGGGGGGUUUUCCUGGCAGCUGCUCAUCCUCGAACUUCCAAAGGAUUCGCUGUGGCAAGCUGGCGAAAGUCUCGAGCAA
..(((((..(.((((((((((((.....((((((....))))))..)))))))...))))).)..)))))((((.((((((.((......)).))).)))..(((....))))))).... (-33.72 = -33.96 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:47 2006