| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,204,651 – 27,204,742 |
| Length | 91 |
| Max. P | 0.702694 |
| Location | 27,204,651 – 27,204,742 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.98 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -10.65 |
| Energy contribution | -10.82 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27204651 91 - 27905053 --UUCCUUUGCAUC-CCACCUGCAAUUUGCAUAUCCAUUUCUGAGUCCUUUACGGGAUUUGCAUAUCCC------CCUCCACAGC-----CAUGAUAUCUCUCAC --.....(((((..-.....))))).....(((((.((..(((.((.....))(((((......)))))------......))).-----.)))))))....... ( -12.80) >DroSec_CAF1 18197 90 - 1 --UUCCUUUGCAUC-CCUCCUGCAAUUUGCAUAUCCAUUUCUGAGUCCUUUACGGGAUUUGCAUAUCC-------CCUCCACAGC-----CAUGAUAUGUCUCAC --.....(((((..-.....)))))...(((((((.((..(((.((.....))(((((......))))-------).....))).-----.)))))))))..... ( -17.30) >DroSim_CAF1 17954 90 - 1 --UUCCUUUGCAUC-CCUCCUGCAAUUUGCAUAUCCAUUUCUGAGUCCUUUACGGGAUUUGCAUAUCG-------CCUCCACAGC-----CAUGAUAUGUCUCAC --.....(((((..-.....)))))...(((((((.((..(((((((((....)))))).((.....)-------).....))).-----.)))))))))..... ( -16.60) >DroEre_CAF1 20095 91 - 1 --UUCCUUUGCUUC-UCUCCUGCAAUUUGCAUAUCCAUUUCUGAGUCCUUUACGGGAUUUGCAUAUCCC------CAUCCUUUGC-----CAUGAUAUGUCUCAC --.....((((...-......))))...(((((((.......(((((((....)))))))(((......------.......)))-----...)))))))..... ( -15.42) >DroYak_CAF1 19031 89 - 1 --UUCCAUUGCUUU-CCU--UGCAAUUUGCAUAUCCAUUCCUGGGUCCUUUGCGGGAUUUGCAUAUCCC------CAUCCUUUGC-----CAGGAUAUGUCUCAC --....(((((...-...--.)))))..((((((((......(((.....((.(((((......)))))------)).)))....-----..))))))))..... ( -23.60) >DroAna_CAF1 20765 105 - 1 UUUUCCUUUGCUUUUUCUGCAGCAAUUUGCAUAUCCAUUUCUGAAUCCCUUGCAGGAUUUGCAUAUCCAUUCUAGUCUCCAUAGUCUCCUCAUGAUAUCUUUCGU ........(((...(((((((((.....)).....((....)).......)))))))...)))((((......((.((....)).))......))))........ ( -13.70) >consensus __UUCCUUUGCAUC_CCUCCUGCAAUUUGCAUAUCCAUUUCUGAGUCCUUUACGGGAUUUGCAUAUCCC______CCUCCACAGC_____CAUGAUAUGUCUCAC .......(((((........)))))..((((.((((......(....)......)))).)))).......................................... (-10.65 = -10.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:43 2006