| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,194,648 – 27,194,739 |
| Length | 91 |
| Max. P | 0.737859 |
| Location | 27,194,648 – 27,194,739 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 88.75 |
| Mean single sequence MFE | -17.24 |
| Consensus MFE | -16.04 |
| Energy contribution | -15.48 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.737859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27194648 91 + 27905053 GGCGCAAUGUUGGCAACAACAGGAGCAGCCAGUAAAAAGAACCAAA----AAACAACCAGGCUAGGCAAACAUUUCAUAUCGUAGAAAUACUUUG (((((..(((((....)))))...)).))).....((((.......----......((......)).....(((((........))))).)))). ( -18.50) >DroSec_CAF1 8244 94 + 1 GGCGCAGUGUUGGCAACAACAGGAGCAGCCAGUAAAAAGAACCAAAA-AAAAACAACCAGGCUAGGCAAACAUUUCAUAUCGUAGAAAUACUUUG (((((..(((((....)))))...)).))).....((((........-........((......)).....(((((........))))).)))). ( -17.40) >DroSim_CAF1 8005 95 + 1 GGCGCAGUGUUGGCAACAACAGGAGCAGCCAGUAAAAAGAACCAAAAAAAAAACAACCAGGCUAGGCAAACAUUUCAUAUCGUAGAAAUACUUUG (((((..(((((....)))))...)).))).....((((.................((......)).....(((((........))))).)))). ( -17.40) >DroAna_CAF1 9107 87 + 1 GGCACAAUGUUGGCAACAACG---GCAGCUAGCAAAAAAA-----AAAUACAACAACCAGGCUAGGCAAACAUUUCAUAUCGUAGAAAUACUUUC .((....(((((....)))))---....(((((.......-----...............)))))))..............(((....))).... ( -15.65) >consensus GGCGCAAUGUUGGCAACAACAGGAGCAGCCAGUAAAAAGAACCAAAA_AAAAACAACCAGGCUAGGCAAACAUUUCAUAUCGUAGAAAUACUUUG .((....(((((....)))))...)).((((((...........................))).)))....(((((........)))))...... (-16.04 = -15.48 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:41 2006