Locus 10133

Sequence ID 3R_DroMel_CAF1
Location 27,182,225 – 27,182,332
Length 107
Max. P 0.934390
window16130

overview

Window 0

Location 27,182,225 – 27,182,332
Length 107
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 79.24
Mean single sequence MFE -19.77
Consensus MFE -14.65
Energy contribution -14.90
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.74
SVM decision value 1.24
SVM RNA-class probability 0.934390
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27182225 107 - 27905053
AAUCCGAAUCCCCAGCCUCAAC-CUCAUCCUCAUCCGCAUCCCCAUCUGC-----AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCAGGCG
..............((((((..-.....................((((((-----((.....)))))))).((((......(((((....)))))..))))....)).)))). ( -23.90)
>DroSec_CAF1 78599 107 - 1
AAUCCCAAUCCCCAGCCUCAAC-CUCAUUCACAUCCACAUCCCCAUCCGC-----AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCAGGCG
..............((((((..-.....................(((.((-----((.....)))).))).((((......(((((....)))))..))))....)).)))). ( -19.30)
>DroSim_CAF1 81911 107 - 1
AAUCCCAAUCCCCAGCCUCAAC-CUCAUCCACAUCCACAUCCCCAUCCGC-----AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCAGGCG
..............((((((..-.....................(((.((-----((.....)))).))).((((......(((((....)))))..))))....)).)))). ( -19.30)
>DroAna_CAF1 84992 107 - 1
GCCCCCCCUUCCCCUCUCCUAAUUUUGUAUAUGU-----UUCUUGUUUGCCUGCCAGCCUUCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGGCCAUGCA-GCG
..................................-----.......................(((((...(((((......(((((....)))))..)))))...))))-).. ( -16.60)
>consensus
AAUCCCAAUCCCCAGCCUCAAC_CUCAUCCACAUCCACAUCCCCAUCCGC_____AGUACCCCUGCAGAUCCGACAUUUUUAUUGGACUUCCAAUUAGUUGACCAUGCAGGCG
.............................................................((((((....((((......(((((....)))))..))))....)))))).. (-14.65 = -14.90 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:37 2006