Locus 10131

Sequence ID 3R_DroMel_CAF1
Location 27,179,502 – 27,179,602
Length 100
Max. P 0.542267
window16127

overview

Window 7

Location 27,179,502 – 27,179,602
Length 100
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.96
Mean single sequence MFE -22.27
Consensus MFE -15.70
Energy contribution -16.23
Covariance contribution 0.53
Combinations/Pair 1.14
Mean z-score -1.58
Structure conservation index 0.71
SVM decision value 0.02
SVM RNA-class probability 0.542267
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27179502 100 + 27905053
CAGCCGCAUUAAAGGGGUCAG-AGGGAAAUGCAAAGUUUAAUUUCAUUUCAGGGCAAAUAUUAUAAAUCAUUUGCUCA----CAUUUCUGUGGGGGUCCCCAA-UC-
..(((.(......).)))(((-(((((((((.(((......))))))))).((((((((..........)))))))).----..))))))((((....)))).-..- ( -27.30)
>DroVir_CAF1 84825 93 + 1
CAGCC--AUAAAAGGGGUCAG-GG-CGAAUGCAAAGUUUAAUUUCAUUUCAUGGCAAAUAUUAUAAAUCAUUUGCUCACACACAUUUCUG----GGGACC-A-----
...((--......))((((.(-((-((((((....(((((.....((((......))))....))))))))))))))...((......))----..))))-.----- ( -15.70)
>DroPse_CAF1 92717 94 + 1
----AGUGGAAAAGGGGUCAGCAGGGAAAUGCAAAGUUUAAUUUCAUUUCAUGGCAAAUAUUAUAAAUCAUUUGCUCA----CAUUUCUG----GACCCCAAA-ACG
----.........((((((..((((((((((.(((......)))))))))..(((((((..........)))))))..----....))))----))))))...-... ( -24.50)
>DroMoj_CAF1 84853 93 + 1
CAGCC--AUAAAAGGGGUCAG-AG-CAAAUGCAAAGUUUAAUUUCAUUUCAUGGCAAAUAUUAUAAAUCAUUUGCUCACACACAUUUCUG----GGGACC-A-----
...((--......))((((.(-((-((((((....(((((.....((((......))))....))))))))))))))...((......))----..))))-.----- ( -16.90)
>DroAna_CAF1 82168 97 + 1
CAGCCGUGUAAAAGGGGUCAG-AGGGAAAUGCAAAGUUUAAUUUCAUUUCAUGGCAAAUAUUAUAAAUCAUUUGCUCA----CAUUUCUG----GACCCCCAAGUU-
.............((((((((-(((((((((.(((......)))))))))..(((((((..........)))))))..----..))))).----))))))......- ( -24.70)
>DroPer_CAF1 148790 94 + 1
----GGUGGAAAAGGGGUCAGCAGGGAAAUGCAAAGUUUAAUUUCAUUUCAUGGCAAAUAUUAUAAAUCAUUUGCUCA----CAUUUCUG----GACCCCAAA-ACG
----.........((((((..((((((((((.(((......)))))))))..(((((((..........)))))))..----....))))----))))))...-... ( -24.50)
>consensus
CAGCCGUAUAAAAGGGGUCAG_AGGGAAAUGCAAAGUUUAAUUUCAUUUCAUGGCAAAUAUUAUAAAUCAUUUGCUCA____CAUUUCUG____GACCCC_AA__C_
.............((((((......((((((.(((......)))))))))..(((((((..........)))))))..................))))))....... (-15.70 = -16.23 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:34 2006