Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,173,534 – 27,173,669 |
Length | 135 |
Max. P | 0.950086 |
Location | 27,173,534 – 27,173,629 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.54 |
Mean single sequence MFE | -23.55 |
Consensus MFE | -20.26 |
Energy contribution | -20.70 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.37 |
Structure conservation index | 0.86 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27173534 95 - 27905053 GGGGCAA-AUAAAAACAAAGCUGGCUGAAAUGGAAAAUAAGAAGUGAGUCCGAGUCGCCGGCAAUGGGGGUCAGGUCAGAUGCUGGAAAUGAUGCU----- ..((((.-...........((((((.((..((((..((.....))...))))..))))))))..(.((.(((......))).)).)......))))----- ( -24.40) >DroSec_CAF1 70062 96 - 1 GGGGCAAAAUAAAAACAAAGCUGGCUGAAAUGGAAAAUAAGAAGCGAGUCCGAGUCGCCGCCAAUGGGGGUCAGGUCAGAUGCUGGAAAUGAUGCU----- ..((((............(((...((((..((........((..((....))..))(((.((...)).)))))..))))..)))........))))----- ( -20.25) >DroSim_CAF1 72942 96 - 1 GGGGCAAAAUAAAAACAAAGCCCGCUGAAAUGGAAAAUAAGAAGCGAGUCCGAGUCGCCGGCAAUGGGGGUCAGGUCAGAUGCUGGAAAUGAUGCU----- .((((..............))))((((...(....).......((((.......))))))))....((.((((..((((...))))...)))).))----- ( -20.84) >DroEre_CAF1 70832 100 - 1 GGAGCAA-AUAAAAACAAAGCUGGCUGAAAUGGAAAAUAAGAAGUGAGUCCGAGUCGUCGGCAAUGGGGGUCAGGUCAGAUGCUGGAGCUGAUGCUCGACU .((((..-...........((((((.((..((((..((.....))...))))..)))))))).......(((((.((........)).))))))))).... ( -28.70) >consensus GGGGCAA_AUAAAAACAAAGCUGGCUGAAAUGGAAAAUAAGAAGCGAGUCCGAGUCGCCGGCAAUGGGGGUCAGGUCAGAUGCUGGAAAUGAUGCU_____ ..((((.............((((((.((..((((..((.....))...))))..))))))))..(.((.(((......))).)).)......))))..... (-20.26 = -20.70 + 0.44)
Location | 27,173,569 – 27,173,669 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -17.82 |
Energy contribution | -19.22 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.10 |
Mean z-score | -2.52 |
Structure conservation index | 0.65 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27173569 100 + 27905053 CCGGCGACUCGGACUCACUUCUUAUUUU-------CCAUUUCAGCCAGCUUUGUUUUUAU-UUGCCCCUCCAAGGGCAAUAAGCUGGCAUUUCUUGUUAGCCGCCUUG .(((((((..(((..............)-------))......((((((((.........-((((((......)))))).)))))))).......))).))))..... ( -30.84) >DroSec_CAF1 70097 101 + 1 GCGGCGACUCGGACUCGCUUCUUAUUUU-------CCAUUUCAGCCAGCUUUGUUUUUAUUUUGCCCCUCCAAGGGCAAUAAGCUGGCGUUUCUUGUUAGCCGCCUUG ((((((((..(((..............)-------))......((((((((..........((((((......)))))).)))))))).......))).))))).... ( -34.24) >DroSim_CAF1 72977 101 + 1 CCGGCGACUCGGACUCGCUUCUUAUUUU-------CCAUUUCAGCGGGCUUUGUUUUUAUUUUGCCCCUCCAAGGGCAAUAAGCUGGCGUUUCUUGUUAGCCGCCUUG .(((((((..(((..((((.((((((.(-------((.((..((.((((...((....))...))))))..))))).))))))..))))..))).))).))))..... ( -30.60) >DroEre_CAF1 70872 100 + 1 CCGACGACUCGGACUCACUUCUUAUUUU-------CCAUUUCAGCCAGCUUUGUUUUUAU-UUGCUCCUGCAAGGGCAAUAAGCUGGCGUUUCUUGUUAGCCGCCUUG ((((....))))................-------........((((((((((((....(-((((....)))))))))..)))))))).................... ( -23.10) >DroYak_CAF1 73766 94 + 1 -------------CUCACUUCUUAUUUUCCAUUUUCCAUUUCAGGCAGCUUUGUUUUUAC-UUACUCCUGCAAGGGCAAUAAGCUGGCGUUUCUUGUUAGCCGCCUUG -------------.............................((((((((((((((((.(-........).)))))))..)))))(((...........))))))).. ( -17.70) >consensus CCGGCGACUCGGACUCACUUCUUAUUUU_______CCAUUUCAGCCAGCUUUGUUUUUAU_UUGCCCCUCCAAGGGCAAUAAGCUGGCGUUUCUUGUUAGCCGCCUUG ..((((.....................................((((((((..........((((((......)))))).))))))))(((.......)))))))... (-17.82 = -19.22 + 1.40)
Location | 27,173,569 – 27,173,669 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -20.58 |
Energy contribution | -22.94 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.12 |
Mean z-score | -3.42 |
Structure conservation index | 0.66 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27173569 100 - 27905053 CAAGGCGGCUAACAAGAAAUGCCAGCUUAUUGCCCUUGGAGGGGCAA-AUAAAAACAAAGCUGGCUGAAAUGG-------AAAAUAAGAAGUGAGUCCGAGUCGCCGG ...(((((((..........((((((((.(((((((....)))))))-.........)))))))).....(((-------(..((.....))...))))))))))).. ( -37.30) >DroSec_CAF1 70097 101 - 1 CAAGGCGGCUAACAAGAAACGCCAGCUUAUUGCCCUUGGAGGGGCAAAAUAAAAACAAAGCUGGCUGAAAUGG-------AAAAUAAGAAGCGAGUCCGAGUCGCCGC ...(((((((..........((((((((.(((((((....)))))))..........)))))))).....(((-------(..............))))))))))).. ( -36.14) >DroSim_CAF1 72977 101 - 1 CAAGGCGGCUAACAAGAAACGCCAGCUUAUUGCCCUUGGAGGGGCAAAAUAAAAACAAAGCCCGCUGAAAUGG-------AAAAUAAGAAGCGAGUCCGAGUCGCCGG ...(((((((.....((..(((...((((((..((((..((((((..............)))).))..)).))-------..))))))..)))..))..))))))).. ( -33.04) >DroEre_CAF1 70872 100 - 1 CAAGGCGGCUAACAAGAAACGCCAGCUUAUUGCCCUUGCAGGAGCAA-AUAAAAACAAAGCUGGCUGAAAUGG-------AAAAUAAGAAGUGAGUCCGAGUCGUCGG ...(((((((..........((((((((.((((((.....)).))))-.........)))))))).....(((-------(..((.....))...))))))))))).. ( -30.10) >DroYak_CAF1 73766 94 - 1 CAAGGCGGCUAACAAGAAACGCCAGCUUAUUGCCCUUGCAGGAGUAA-GUAAAAACAAAGCUGCCUGAAAUGGAAAAUGGAAAAUAAGAAGUGAG------------- ..((((((((.....(......).(((((((.((......)))))))-))........)))))))).............................------------- ( -19.00) >consensus CAAGGCGGCUAACAAGAAACGCCAGCUUAUUGCCCUUGGAGGGGCAA_AUAAAAACAAAGCUGGCUGAAAUGG_______AAAAUAAGAAGUGAGUCCGAGUCGCCGG ...(((((((..........((((((((.(((((((....)))))))..........))))))))..........................((....))))))))).. (-20.58 = -22.94 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:31 2006