Locus 10128

Sequence ID	3R_DroMel_CAF1
Location	27,162,017 – 27,162,131
Length	114
Max. P	0.715719

overview

Window 1

Location	27,162,017 – 27,162,131
Length	114
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	82.02
Mean single sequence MFE	-37.23
Consensus MFE	-24.98
Energy contribution	-25.73
Covariance contribution	0.75
Combinations/Pair	1.00
Mean z-score	-1.81
Structure conservation index	0.67
SVM decision value	0.39
SVM RNA-class probability	0.715719
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27162017 114 - 27905053
UGCCAUUUCUCCUUGUGCAUAUCUGUAGCCAAAGCCACAGACGUGGCCACAAGGCAGGCAAAGGCAAAGGCAUAGGCAAAGGCAAAGGCAAGUUGGCAAUCCGCAGGCGGGCAU
(((((...(((((((((((..(((((.((....)).)))))..))..))))))).))((....((....((....))....))....))....))))).((((....))))... ( -39.20)
>DroSec_CAF1 58614 96 - 1
UGCCAUUUCUCCUUGUGCAU------AGCCAAAGCCACAGACGUGGCCACAAGGCAGGCGAAGGCAAAGGC------UACGG------CAAGUUGGCAAUCCGCAGGCGGGUAU
(((((...(((((((((...------.......(((((....)))))))))))).))((....))....((------....)------)....)))))(((((....))))).. ( -36.60)
>DroSim_CAF1 61427 108 - 1
UGCCAUUUCUCCUUGUGCAUAUCUGUAGCCAAAGCCACAGACGUGGCCACAAGGCAGGCAAAGGCAAAGGC------UAUGGCAAAGGCAAGUUGGCAAUCCGCAGGCGGGCAU
((((((.((((((((((((..(((((.((....)).)))))..))..))))))).)))....(((....))------)))))))...((..((..((.....))..))..)).. ( -37.70)
>DroEre_CAF1 59467 96 - 1
UGCCAUUUCUCCGUGUGCAUAUCUGC-GCCAAAGCCACAAACGUGGCACCAAGGCAGGCAGUGGAAAGG-----------------GGCAAGUUGGCAAUCCGCAGGCGGGCAU
(((((((((((((.(((((....)))-)))...(((((....))))).(((..(....)..)))...))-----------------)).))).))))).((((....))))... ( -35.40)
>consensus
UGCCAUUUCUCCUUGUGCAUAUCUGUAGCCAAAGCCACAGACGUGGCCACAAGGCAGGCAAAGGCAAAGGC______UA_GG____GGCAAGUUGGCAAUCCGCAGGCGGGCAU
(((((...((((((((((.........))....(((((....))))).)))))).))((....))............................))))).((((....))))... (-24.98 = -25.73 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:29 2006