Locus 10126

Sequence ID 3R_DroMel_CAF1
Location 27,154,466 – 27,154,571
Length 105
Max. P 0.592639
window16118

overview

Window 8

Location 27,154,466 – 27,154,571
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.97
Mean single sequence MFE -23.82
Consensus MFE -19.99
Energy contribution -20.02
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.71
Structure conservation index 0.84
SVM decision value 0.12
SVM RNA-class probability 0.592639
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27154466 105 - 27905053
A----UAUAUGCGC-----------ACAGGAAGAAUGUCGUAAAAAAGUUUUACGAUCAAACAUUGCACUUUAUGUGCUUUUAUGUAAAAUUACCGUACAACAUUGGCAACAUUGUCAGC
.----.......((-----------...((......((((((((.....))))))))...((((.((((.....))))....)))).......)).....(((.((....)).)))..)) ( -21.00)
>DroPse_CAF1 72893 116 - 1
A----UAUAUGCGCGCUGCUGUGCCACAGGAAAAAUGUCGUAAAAAAGUUUUACGAUCAAACAUUGCACUUUAUGUGCUUUUAUGUAAAAUUACCGUACAACAUUGGCAACAUUGUCUGC
.----....(((((((....))))....((......((((((((.....))))))))...((((.((((.....))))....)))).......)))))(((((.((....)).))).)). ( -26.20)
>DroGri_CAF1 82947 109 - 1
AUAUAUAUAUGCGU-----------ACAGGAAAAAUGUCGUAAAAAAGUUUUACGAUCAAACAUUGCACUUUAUGUGCUUUUAUGUAAAAUUACCGUACAACAUUGGCAACAUUGUCAGC
..........((((-----------((.((......((((((((.....))))))))...((((.((((.....))))....)))).......)))))).(((.((....)).)))..)) ( -25.10)
>DroWil_CAF1 72414 105 - 1
A----UAUAUGCGC-----------ACAGGAAAAAUGUCGUAAAAAAGUUUUACGAUCAAACAUUGCACUUUAUGUGCUUUUAUGUAAAAUUACCGUACAGCAUUGGCAACAUUGUCAGC
.----...((((..-----------...((......((((((((.....))))))))...((((.((((.....))))....)))).......)).....))))(((((....))))).. ( -23.20)
>DroMoj_CAF1 64204 105 - 1
A----UAUAUGCGU-----------ACAGGAAAAAUGUCGUAAAAAAGUUUUACGAUCAAACAUUGCAGUUUAUGUGCUUUUAUGUAAAAUUACCGUACAACAUUGGCAACAUUGUCAGC
.----.....((((-----------((.((......((((((((.....))))))))...((((...(((......)))...)))).......)))))).(((.((....)).)))..)) ( -20.90)
>DroPer_CAF1 129013 116 - 1
A----UAUAUGCGCGCUGCUGUGCCACAGGAAAAAUGUCGUAAAAAAGUUUUACGAUCAAACAUUGCACUUUAUGUGCUUUUAUGUAAAAUUACCGUACAACAUUGGCAACAUUGUCAGC
.----.........((((.(((((....((......((((((((.....))))))))...((((.((((.....))))....)))).......)))))))(((.((....)).))))))) ( -26.50)
>consensus
A____UAUAUGCGC___________ACAGGAAAAAUGUCGUAAAAAAGUUUUACGAUCAAACAUUGCACUUUAUGUGCUUUUAUGUAAAAUUACCGUACAACAUUGGCAACAUUGUCAGC
..........((................((......((((((((.....))))))))...((((.((((.....))))....)))).......)).....(((.((....)).)))..)) (-19.99 = -20.02 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:26 2006