Locus 10125

Sequence ID 3R_DroMel_CAF1
Location 27,153,416 – 27,153,511
Length 95
Max. P 0.670755
window16117

overview

Window 7

Location 27,153,416 – 27,153,511
Length 95
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 77.91
Mean single sequence MFE -33.86
Consensus MFE -22.68
Energy contribution -24.76
Covariance contribution 2.08
Combinations/Pair 1.07
Mean z-score -1.59
Structure conservation index 0.67
SVM decision value 0.29
SVM RNA-class probability 0.670755
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27153416 95 - 27905053
AUCA------------AGUGUACGUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAGCCAUAAAUAUGGGAAUCGGG------GCGAGUAGGUGCAUCCGCAGGGGUG
..((------------..((..(((((..(((((.(((((((.....))))))).)).....((((....)))).)))..))------)))..))..))(((((....))))) ( -27.60)
>DroSec_CAF1 55064 113 - 1
AUCAAUCCCCACGCUUAGUGUACUUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAACCAUAAACAAGGGAAUAUGGGAAUCAGCGAGGAGGUGCAUCCGCAGGGGUG
......((((..((...(((((((((((..((((.(((((((.....))))))).))))...(((((..........))))).........)))))))))))..)).)))).. ( -37.80)
>DroSim_CAF1 57912 107 - 1
AUCAAUCCCCACGCUUAGUGUACUUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAACCAUAAAUAUGGGAAUCGGG------GCGAGGAGGUGCAUCCGCAGGGGUG
......((((..((...(((((((((((..((((.(((((((.....))))))).))))...((((....))))........------...)))))))))))..)).)))).. ( -37.60)
>DroEre_CAF1 55922 95 - 1
AUCAAACCCCAAACUUAGGGUACUUUUUAAUUGGUCAGCUGGACAUGUCAGCUGUCCAGAAACCAUAAAC------------------AAGAGGAGCUGCAUUCGCAGGGCGG
.....((((........)))).(((((....((((...(((((((.(....))))))))..)))).....------------------)))))(..((((....))))..).. ( -28.00)
>DroYak_CAF1 58178 108 - 1
AUCAAACCCCUCGUCUAGUGUACUUUUUAAUUGGUCAGCUGGACG-GUCGGCUGUCCAAAGGCCAUAAACUAGGGAACACGGGG----AAGAGGAGUUGCAUUCGCAGGGGUG
.....(((((((.(((.((((.((((.....(((((...((((((-(....)))))))..)))))......)))).))))..))----).)).....(((....)))))))). ( -38.30)
>consensus
AUCAAACCCCACGCUUAGUGUACUUUUUAAUUGGUCAGCUGGACCUGUCAGCUGUCCAGAAACCAUAAACAAGGGAAUAGGG______GCGAGGAGGUGCAUCCGCAGGGGUG
......((((.......(((((((((((..((((.(((((((.....))))))).))))...((........)).................))))))))))).....)))).. (-22.68 = -24.76 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:25 2006