| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,131,515 – 27,131,609 |
| Length | 94 |
| Max. P | 0.937599 |
| Location | 27,131,515 – 27,131,609 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.99 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -24.19 |
| Energy contribution | -25.25 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27131515 94 + 27905053 -GAUUAGCCGGCGGUUAGCCAACGGAUGUUGACGAGUACUUUUCGGUCUGUAGUCACUCGAACAUUCUCUGGGUGGUGUUAAUAGAUUAAAAGGU------------ -(((...(((..((....))..)))..))).......((((((..((((((...(((.((..((.....))..)))))...))))))..))))))------------ ( -23.50) >DroSec_CAF1 33385 95 + 1 -GAUUAGCCGGGGGUUAGCCAACGGAUGUUGACGAGUACUUUUCGGUCUGUGGUCACUCGAAAAUUC--UGGGUGG---UAACAGAUUAAAAGGCAUUUAA------ -(((...(((..((....))..)))..)))...((((.(((((..((((((..(((((((.......--)))))))---..))))))..))))).))))..------ ( -31.10) >DroSim_CAF1 35717 95 + 1 -GAUUAGCCGGCGGUUAGCCAACGGAUGUUGACGAGUACUUUUCGGUCUGUGGUCACUCGAAAAUUC--UGGGUGG---UAACAGAUUAAAAGGUAUUUAA------ -(((...(((..((....))..)))..)))...((((((((((..((((((..(((((((.......--)))))))---..))))))..))))))))))..------ ( -34.00) >DroEre_CAF1 33421 102 + 1 CGAUUAGCCAGCGGUUAGCCAGCGGAUGUUGACGAAUACUUUUCAGUCUGCAGUCACUCGAACAUUC--UGGGUGG---CAACAGAUUAAGAAGUAUUUCAGUAAGG ((((...((.((((....)).))))..))))..((((((((((.((((((..((((((((.......--)))))))---)..)))))).))))))))))........ ( -33.10) >consensus _GAUUAGCCGGCGGUUAGCCAACGGAUGUUGACGAGUACUUUUCGGUCUGUAGUCACUCGAAAAUUC__UGGGUGG___UAACAGAUUAAAAGGUAUUUAA______ .(((...(((..((....))..)))..)))...((((((((((..((((((..(((((((.........))))))).....))))))..))))))))))........ (-24.19 = -25.25 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:15 2006