| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,122,900 – 27,123,004 |
| Length | 104 |
| Max. P | 0.706585 |
| Location | 27,122,900 – 27,123,004 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -16.87 |
| Consensus MFE | -11.05 |
| Energy contribution | -12.50 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.706585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27122900 104 - 27905053 AGGGUGUGCUUGAUAUGGAAACUUGAUUUAAUUCAAUCUUAAGAUCCAGCAGUGUUAAAAUGAAAAAAAAAAACUGAAAUCAUAAUAUAUGCAUUUAUGCACCU .(((((((((.(((..(((...((((......)))))))....))).))).((((....((((................)))).....))))......)))))) ( -16.99) >DroSec_CAF1 24861 96 - 1 AGGGUGUGCUUGAUAAGGAAACUUGAAUUAAUUCAAUCUUAAGA------AAUCUUAAAUA--AUUCAAAUCAUUCAAAUCAUAAUACAUCCAUUUAUGCACCU .(((((((..(((((((....)))((((((........(((((.------...))))).))--))))...........))))...)))))))............ ( -18.30) >DroSim_CAF1 26737 99 - 1 AGGGUCUGCUUGAUAAGGAAACUUGAAUUAUUUCAAACUUAAGAUCCAGCAAUCUUAAAAU--AUGUAAA---UUCAUAUCAUAAUAUAUCCAAUUUUACACCU .((((.((..(((((((....))((((((.........(((((((......)))))))...--.....))---)))))))))...)).))))............ ( -15.33) >consensus AGGGUGUGCUUGAUAAGGAAACUUGAAUUAAUUCAAUCUUAAGAUCCAGCAAUCUUAAAAU__AUAAAAA__AUUCAAAUCAUAAUAUAUCCAUUUAUGCACCU .(((((((..(((((((....)))).............(((((((......))))))).....................)))...)))))))............ (-11.05 = -12.50 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:12 2006