| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,116,173 – 27,116,268 |
| Length | 95 |
| Max. P | 0.617642 |
| Location | 27,116,173 – 27,116,268 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -25.41 |
| Consensus MFE | -17.30 |
| Energy contribution | -17.55 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27116173 95 - 27905053 CCCGGCGAGAGAGUUUCAAGUGUAUUAGAAACAGUCUCGUAGAGACGGGAGACCCGUCCCA----UACACUGCAAGG-AAAAUAUAGUUAACACU----GUGUA ((..((((((..(((((..........)))))..))))(((..((((((...))))))...----)))...))..))-...(((((((....)))----)))). ( -29.30) >DroSec_CAF1 18299 95 - 1 CCCGGCGAGAGAGUUUCAAGUGUAUUAGAAACAGUCUCGUGGAGACGGGAGACCAGUCGCA----UACACUGAACGG-AAAAUAUAGUUAAUACC----UUGUA .(((.(....)...((((.((((((..((....(((((.((....)).)))))...))..)----))))))))))))-.................----..... ( -26.40) >DroSim_CAF1 19950 91 - 1 CCCGGCGAGAGAGUUUCAAGUGUAUUAGAAACAGUCUCGUGGAGACGGGAGACCAGUCCCA----UACACUGCACGA-AAAAUAUAGUUAAUACC--------A ..((((((((..(((((..........)))))..))))((((.(((((....)).))))))----).....)).)).-.................--------. ( -25.90) >DroEre_CAF1 18098 101 - 1 CCCGGCGAGAGAGUUUCAAGUGUAUUAGAAACAGUCUCGUGACGAAGG---CCCCCUCCCCUCACUGCACUGCAAGAAAAAAUACAUAAAAUACUUGUAUUGUA ....((((((..(((((..........)))))..))))))...((.((---.......)).))..((((.((((((.................)))))).)))) ( -20.03) >consensus CCCGGCGAGAGAGUUUCAAGUGUAUUAGAAACAGUCUCGUGGAGACGGGAGACCAGUCCCA____UACACUGCAAGA_AAAAUAUAGUUAAUACC____UUGUA ....((((((..(((((..........)))))..))))))...(((((....)).))).............................................. (-17.30 = -17.55 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:08 2006