Locus 10112

Sequence ID 3R_DroMel_CAF1
Location 27,115,173 – 27,115,270
Length 97
Max. P 0.500000
window16095

overview

Window 5

Location 27,115,173 – 27,115,270
Length 97
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 78.84
Mean single sequence MFE -16.93
Consensus MFE -10.29
Energy contribution -10.24
Covariance contribution -0.05
Combinations/Pair 1.27
Mean z-score -1.41
Structure conservation index 0.61
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27115173 97 - 27905053
AUCU--------CGAUUCGUGUU--AAUUUAUCAAAAUGCAUGUCACAUUAAAACGGCAUUUGGAUAAAUUCGAAUUCAUUGAAUAUACAUAUA------UGAAUGAAUUAUC
....--------...((((....--((((((((.((((((.(((.........))))))))).))))))))))))((((((..((((....)))------).))))))..... ( -17.50)
>DroPse_CAF1 30184 99 - 1
ACAUCGUUUAGCCCAUUUACAUUCACAUUUAUCACAAUGCCUGUCACUUUAG---GGUAUUUAAAUA-AUUCGAAUUAUUCAAAUAU----AUAA-----UU-GAUAAUUAUU
............................((((((.....((((......)))---)((((((.((((-((....)))))).))))))----....-----.)-)))))..... ( -11.80)
>DroSec_CAF1 17319 93 - 1
UUUU--------CGUUUCGUGUU--AAUUUAUCAAAAUGCAUGUCACAUUAAAACGGCAUUUGGAUAAAUUCGAGUUCAUUGAAUAU----AUA------UGAAUGAAUUAUC
..((--------((((.(((((.--...(((((.((((((.(((.........))))))))).)))))((((((.....))))))..----)))------))))))))..... ( -18.60)
>DroSim_CAF1 18980 93 - 1
UUUU--------CGUUUCGUGUU--AAUUUAUCAAAAUGCAUGUCACAUUAAAACGGCAUUUGGAUAAAUUCGAGUUCAUUGAAUAU----AUA------UGAAUGAAUUAUC
..((--------((((.(((((.--...(((((.((((((.(((.........))))))))).)))))((((((.....))))))..----)))------))))))))..... ( -18.60)
>DroEre_CAF1 17127 92 - 1
UUUU--------CGAUUCGUGUU--AAUCUAUCAAAAUGCAUGUCACAUUAAAA-AGCAUUUGGAUAAAUUCGAGUUUAUUGAUUAU----AUA------UGAAUGAAUUAUC
..((--------(.(((((((((--((((.....((((((..............-.)))))).(((((((....)))))))))))).----)))------))))))))..... ( -16.86)
>DroYak_CAF1 18173 99 - 1
UUUU--------CGAUUCGCGUU--AAUUUAUCAAAAUGCAUGUCACAUUAAAAGAGCAUUUGGAUAAAUUCGAGUUUAUUGAUUAU----AUACUUGUGUGCAUGAAUUAUC
....--------.((((((.((.--((((((((.((((((................)))))).))))))))(((((.(((.....))----).)))))...)).))))))... ( -18.19)
>consensus
UUUU________CGAUUCGUGUU__AAUUUAUCAAAAUGCAUGUCACAUUAAAACGGCAUUUGGAUAAAUUCGAGUUCAUUGAAUAU____AUA______UGAAUGAAUUAUC
.........................((((((((.((((((................)))))).))))))))..((((((((.....................))))))))... (-10.29 = -10.24 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:07 2006