Locus 10111

Sequence ID 3R_DroMel_CAF1
Location 27,104,025 – 27,104,124
Length 99
Max. P 0.656375
window16094

overview

Window 4

Location 27,104,025 – 27,104,124
Length 99
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 75.65
Mean single sequence MFE -29.32
Consensus MFE -9.65
Energy contribution -10.52
Covariance contribution 0.86
Combinations/Pair 1.06
Mean z-score -2.36
Structure conservation index 0.33
SVM decision value 0.26
SVM RNA-class probability 0.656375
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27104025 99 - 27905053
CCUCAACCUGAAGCUCAACCGGGGCAUCCACAUCGGCAUUCAGGCUUAG-------------CGUUUUGCAUUU-------AGCAUUCAGCCGUGUCCAAUGCUAAGAUCAAUGCCACU
.........((.((((.....)))).))......((((((....(((((-------------((((..((((..-------.((.....)).))))..)))))))))...))))))... ( -28.30)
>DroSec_CAF1 12444 106 - 1
CCUCAACCUGAAGCUCAACCGGGGCAUCCACAUCGGCAUUCAAGCUUAG------CAUUCGGCGUUUUGCAUUU-------AGCAUUCAGCCGUGUCCAAUGCUAAGAUCAAUGCCACU
.........((.((((.....)))).))......((((((....(((((------((((((((....(((....-------.)))....)))).....)))))))))...))))))... ( -34.10)
>DroSim_CAF1 14054 113 - 1
CCUCAACCUGAAGCUCAACCGGGGCAUCCACAUCGGCAUUCAAGCUUAG------CAUUCGGCGUUUUGCAUUUAGCAUUUAGCAUUCAGCCGUGUCCAAUGCUAAGAUCAAUGCCACU
.........((.((((.....)))).))......((((((....(((((------((((((((....(((............)))....)))).....)))))))))...))))))... ( -33.00)
>DroEre_CAF1 12070 99 - 1
CCUCAACCUGAAGCUCAACCUGAAGCUC-A-ACCGGCGC----------AUUCA-GCUCCAGCGUUUUGCAUUU-------AGCAUUCAGCCGUGUCCAAUGCUAAGAUCAAUGCCACU
........(((.((((.....).)))))-)-...(((((----------(....-((....))....))).(((-------((((((..((...))..)))))))))......)))... ( -22.60)
>DroYak_CAF1 12941 104 - 1
CCUCAACC------UCAACCUGAAGCUC-ACAUCGGCAUUCAGCUUUAGGUUCA-GCUUCAGCGUUUUGCAUUU-------AGCAUUCAGCCGUGUCCAAUGCUAAGAUCAAUGCCACU
........------..(((((((((((.-((...(((.....)))....))..)-))))))).)))..((((((-------((((((..((...))..))))))).....))))).... ( -24.20)
>DroAna_CAF1 14140 105 - 1
CCUCAACCUCAGCUUCGGCAGCAGCAGCGGCAGAGGCAG--AAGC-----AUCGGCAUUCAGAAUUUAGCAUUU-------AGCAUUCAGCCAUGUCCAAUGCUAAGAUCAAUGCCACU
((((..((...((....)).((....))))..))))...--....-----...((((((..((.(((((((((.-------.((((......))))..))))))))).))))))))... ( -33.70)
>consensus
CCUCAACCUGAAGCUCAACCGGAGCAUCCACAUCGGCAUUCAAGCUUAG______CAUUCAGCGUUUUGCAUUU_______AGCAUUCAGCCGUGUCCAAUGCUAAGAUCAAUGCCACU
..................................((((((.....................((.....))...........((((((..((...))..))))))......))))))... ( -9.65 = -10.52 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:06 2006