Locus 10110

Sequence ID 3R_DroMel_CAF1
Location 27,091,493 – 27,091,583
Length 90
Max. P 0.857507
window16093

overview

Window 3

Location 27,091,493 – 27,091,583
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 71.03
Mean single sequence MFE -30.69
Consensus MFE -16.66
Energy contribution -17.00
Covariance contribution 0.34
Combinations/Pair 1.43
Mean z-score -1.68
Structure conservation index 0.54
SVM decision value 0.81
SVM RNA-class probability 0.857507
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27091493 90 + 27905053
UUGGCGGUGGGUCGAGCUGCCUGGUGGAUACCCAAUCCCGGAAGGGUAGCACGAUACCCACCCAUC--CGC--ACUCUGGCACCCAACCACUUA-----
((((.(((((((((.(((((((...((((.....)))).....))))))).)))..))))))....--.((--......))..)))).......----- ( -33.40)
>DroVir_CAF1 46 72 + 1
UUGGUGGUUGGACGCGCCGCCUGGUGGAUACCCAAACCAAGGA--U-----------UCAUCCACC--UGC-------GUCAGUCCCGCAAAUG-----
......((.((((..(.(((..(((((((..((.......)).--.-----------..)))))))--.))-------).).)))).)).....----- ( -24.10)
>DroSec_CAF1 31 90 + 1
UUGGCGGUGGGCCGAGCUGCCUGGUGGAUACCCAAUCCCGGAAGGGUAGCACGAUACCCACCCAUC--CGC--ACUCUGGCACCCAACCACUUA-----
.(((..(.((((((((.(((..(((((....((......))..(((((......)))))..)))))--.))--)))).))).)))..)))....----- ( -33.70)
>DroSim_CAF1 31 90 + 1
UUGGCGGUGGGCCGAGCUGCCUGGUGGAUACCCAAUCCCGGAAGGGUAGCACGAUACCCACCCAUC--CGC--ACUCUGGCACCCAACCACUUA-----
.(((..(.((((((((.(((..(((((....((......))..(((((......)))))..)))))--.))--)))).))).)))..)))....----- ( -33.70)
>DroYak_CAF1 31 90 + 1
UUGGCGCCGGGUCGAGCUGCCUGGUGGAUACCCAAUCCCGGCAGGGUAGCACGUUACCCACCCAUC--GCC--ACACUGACAUCCAACCACUUA-----
.(((((..((((.....((((.(((((....)))..)).))))((((((....))))))))))..)--)))--)....................----- ( -32.60)
>DroAna_CAF1 43 93 + 1
CUGGCAGUAGGACGGGCUGCCUGGUGGAUUCCCAAUCCGGGAA-----AAAAGAAACCCACCUCCCUCCUCCAACUACGUCACGCACC-UGUUAUUGCC
..(((((((..(((((.(((.(((.((((.....))))((((.-----..............)))).............))).)))))-)))))))))) ( -26.66)
>consensus
UUGGCGGUGGGACGAGCUGCCUGGUGGAUACCCAAUCCCGGAAGGGUAGCACGAUACCCACCCAUC__CGC__ACUCUGGCACCCAACCACUUA_____
..((((((.......)))))).(((((.........(((....)))...........)))))..................................... (-16.66 = -17.00 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:05 2006