Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,204,449 – 3,204,550 |
Length | 101 |
Max. P | 0.993824 |
Location | 3,204,449 – 3,204,550 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 91.47 |
Mean single sequence MFE | -30.25 |
Consensus MFE | -27.08 |
Energy contribution | -27.82 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.94 |
Structure conservation index | 0.89 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3204449 101 + 27905053 CCCCUACCGACCGCACUUACAAGCUGUUGGGCCCACAAAGCAGGCGUCCAAUAACUUAACACGCCCAUUUCCACCGCAAAACACGGCAUCUGCCGAGGGCC--------- ......(((((.((........)).)))))((((........(((((.............)))))..................((((....)))).)))).--------- ( -29.52) >DroSec_CAF1 23832 101 + 1 CCCCUGCCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCUCAUUCCCACCGCAAAACACGGCAUCUGCCGAGGGCC--------- .((((.......((......((((((((((((((........)).)))))))))))).....))...................((((....))))))))..--------- ( -30.90) >DroSim_CAF1 30685 101 + 1 CCCCUGUCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCCCAUUCCCACCGCAAAACACGGCAUCUGCCGAGGGCC--------- ....................((((((((((((((........)).)))))))))))).....((((.........(.....).((((....)))).)))).--------- ( -30.80) >DroEre_CAF1 23432 110 + 1 CCCCCGCCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCCCAUUCCCACCGCAAAACACCGCAUCUGCCGAGGGGCAUCCACAUC (((((((.((..((......((((((((((((((........)).)))))))))))).....((...........))........)).)).).)).)))).......... ( -29.80) >consensus CCCCUGCCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCCCAUUCCCACCGCAAAACACGGCAUCUGCCGAGGGCC_________ .((((.......((......((((((((((((((........)).)))))))))))).....))...................((((....))))))))........... (-27.08 = -27.82 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006