| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,090,181 – 27,090,273 |
| Length | 92 |
| Max. P | 0.615712 |
| Location | 27,090,181 – 27,090,273 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.47 |
| Mean single sequence MFE | -22.11 |
| Consensus MFE | -11.76 |
| Energy contribution | -11.77 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27090181 92 - 27905053 CGAAUUCUUCCUC--UGCCA-------CCCACUUCCUCACCGGAU-----GUUUCGCUUCGAGCA-GGCACUUCCUCC--GAAAGGGACCUCUGCUAAAUUGAUUCUCA .(((((.......--((((.-------...((.(((.....))).-----))...((.....)).-)))).....(((--....)))..............)))))... ( -17.40) >DroSec_CAF1 9062 92 - 1 CGAAUCCUUCCUC--CGCCA-------CCCACUUCCGCACCGGAU-----GUUUCGCUUCGAGCA-GGGACUUCCUCC--GAAAAGGACCCCUGCUAAAUUGAUUCUCA .(((((.......--.((..-------...((.((((...)))).-----))...))....((((-(((...((((..--....)))).))))))).....)))))... ( -25.00) >DroSim_CAF1 9045 92 - 1 CGAAUUCUUCCUC--CGCCA-------CCCACUUCCGCAACGGAU-----GUUUCGCUCCGAGCA-GGGACUUCCUCC--GAAAAGGACCCCUGCUAAAUUGAUUCUCA .(((((.......--.....-------.............((((.-----(.....)))))((((-(((...((((..--....)))).))))))).....)))))... ( -23.10) >DroEre_CAF1 13967 92 - 1 CGAAUUCUACCUA--CUCUA-------CCCACUUCCACACCGGAU-----GUUUCGUUUCGAGCA-GGGACUUCCUCG--AAAAAGAACCCCUGCUAAAUUGAUUCUCA .(((((.......--.....-------...((.(((.....))).-----)).........((((-(((.(((.....--...)))...))))))).....)))))... ( -16.80) >DroYak_CAF1 9635 94 - 1 CGAAUUCUUCCCA--CUCCA-------UCCACUUCCGCACCGGAU-----GUUUCGUUUCGAGCA-GGGACUUCCUUCACAAAAAGGACCCCUGCUAAAUUGAUUCUCA .(((((.......--...((-------(((...........))))-----)..........((((-(((...(((((......))))).))))))).....)))))... ( -24.10) >DroAna_CAF1 9000 106 - 1 CGAAUGCUGCUCACACUCCACUGUCUUUGCAGUUCCGGAUCAGAAACUCAGCUUGACUUUGGGCUGGGGACUCCCUCC--A-UAAGGGCAUUGGAUAAAUUAAUUAUCA .......(((((.......(((((....)))))...(((.......((((((((......)))))))).......)))--.-...)))))...(((((.....))))). ( -26.24) >consensus CGAAUUCUUCCUA__CGCCA_______CCCACUUCCGCACCGGAU_____GUUUCGCUUCGAGCA_GGGACUUCCUCC__AAAAAGGACCCCUGCUAAAUUGAUUCUCA .(((((...........................(((.....))).................((((.(((...((((........))))))).)))).....)))))... (-11.76 = -11.77 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:04 2006