Locus 10107

Sequence ID 3R_DroMel_CAF1
Location 27,087,703 – 27,087,800
Length 97
Max. P 0.917417
window16089

overview

Window 9

Location 27,087,703 – 27,087,800
Length 97
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 84.25
Mean single sequence MFE -23.64
Consensus MFE -17.58
Energy contribution -17.58
Covariance contribution 0.00
Combinations/Pair 1.10
Mean z-score -2.22
Structure conservation index 0.74
SVM decision value 1.11
SVM RNA-class probability 0.917417
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27087703 97 - 27905053
AAAUUACCUGUCUGGAUGGCAGGUAAACUCAUUAGGCGCUUUUCUGAUAGUUCAACCAAGGCAUUGCCCUUACUGAUCUUGGUUAACAAAUACAACU----
...(((((((((.....)))))))))....((((((......)))))).(((.((((((((((.((....)).)).)))))))))))..........---- ( -25.40)
>DroSec_CAF1 6612 101 - 1
AAAUUACCUGUCUGGAUGGCAGGUAAACUCAUUAGGCGCUUAUCUUAUAGUUCAACCAAGGCAUUGCCCUUACUGAUCUUGGGUAACCAAUACUAAUACUA
...(((((((((.....)))))))))....((((((.(((........))).)......((..((((((...........))))))))....))))).... ( -24.70)
>DroSim_CAF1 6592 101 - 1
AAAUUACCUGUCUGGAUGGCAGGUAAACUCAUUAGGCGCUUAUCUGAUUGUUCAACCAAGGCAUUGCCCUUACUGAUCUUGGGUAACCAAUACUAAUACUA
...(((((((((.....)))))))))....(((((((.(((...(((....)))...))))).((((((...........))))))......))))).... ( -26.90)
>DroEre_CAF1 6874 94 - 1
AAAUUACCUGUCUGGAUCCCAGGUAAACUCAUUAGGCGCUUAUCUUAAAGUUCAGCCAAGACAUUGCCCUUACUGAUCUUGGGUAACAAAUAC-------A
...(((((((.........)))))))........(((((((......))))...)))......((((((...........)))))).......-------. ( -19.30)
>DroYak_CAF1 6645 80 - 1
UAAUUACCUGUCUGGAUGGCAGGUAAACUCAUUAGGCGCUUAUCUGAUAGUUCAACCAAGACAUUGCCCCUACUGAUCU---------------------A
...(((((((((.....)))))))))..(((.((((.((...(((.............)))....)).)))).)))...---------------------. ( -21.92)
>consensus
AAAUUACCUGUCUGGAUGGCAGGUAAACUCAUUAGGCGCUUAUCUGAUAGUUCAACCAAGGCAUUGCCCUUACUGAUCUUGGGUAACAAAUAC_A_U___A
...(((((((((.....)))))))))..(((.((((.((...(((.............)))....)).)))).)))......................... (-17.58 = -17.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:01 2006