| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,086,876 – 27,086,993 |
| Length | 117 |
| Max. P | 0.748012 |
| Location | 27,086,876 – 27,086,993 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.43 |
| Mean single sequence MFE | -33.08 |
| Consensus MFE | -12.46 |
| Energy contribution | -14.22 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.748012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27086876 117 + 27905053 CAUCGGAACGAGAAGUACAGAAAUAUUGCACAAGCCGUCCGUCAGAAAGAUGGUUUGGCUGUUGUCGCAAUCAUGGUGGCUAUUGUUAGGGUAAUCCAUGAUAGAAAUG---AUGUGUGA (((((.....................(((((((((((.(((((.....)))))..)))))..))).)))(((((((..(((........)))...))))))).....))---)))..... ( -32.00) >DroSec_CAF1 5755 117 + 1 CAUCGGAACGAGAAGUACAAAAAUAUUGCGGAAGCCGUCCGUCAUAAGGAUGGCUUAGCUGUUGUCGCAAUCAUGGUUUCCAUUGUUAGGGUAAUCCAUGAUAGAAAUG---AUGUAUGA (((((.........((((((.......((..(((((((((.......))))))))).))..)))).)).(((((((..(((.......)))....))))))).....))---)))..... ( -34.00) >DroSim_CAF1 5741 117 + 1 CAUCGGAACGAGAAGUACAAAAAUAUUGCGGAAGCCGUCCGUCAUAAGGAUGGCUUGGCUGUGGUCGCAAUCAUGGUUUCCAUUGUUAGGGUAAUCCAUGAUAGAAAUG---AUGUGUGA (((((.....................(((..(((((((((.......)))))))))(((....))))))(((((((..(((.......)))....))))))).....))---)))..... ( -34.70) >DroEre_CAF1 6065 120 + 1 CAUUGGAACGAAAAGUACAAAAAUGUUGCGGAAGCAGCUGAACAAAAAGAUGGUUUGGCUGUUGUUGCCGUUCUGAUGUCCAUUGAUAAGGUAAUAUAUUGUAGAUUUCUACAUGCCUCA (((..(((((......(((....))).((((.((((((..(((.........)))..)))))).)))))))))..)))..........(((((......(((((....)))))))))).. ( -35.10) >DroYak_CAF1 5885 117 + 1 UGCUAUAGCGAAAAGUACAAAGAUAUAAUGGAGGCAGUGCAGCAUAAAGGUGGGAUUGCUGUUGCGGCGAUUUUCUUGGCCGCUGACAAGGUAAUUAACUAUAAAAAUG---CUGGCUUA .((....))......................((((....((((((....(((((((((((((((((((.(......).))))).)))..)))))))..))))....)))---))))))). ( -29.60) >consensus CAUCGGAACGAGAAGUACAAAAAUAUUGCGGAAGCCGUCCGUCAUAAAGAUGGCUUGGCUGUUGUCGCAAUCAUGGUGUCCAUUGUUAGGGUAAUCCAUGAUAGAAAUG___AUGUCUGA ...........................((((.(((((.(((((.....)))))..)))))....)))).(((((((...((........))....))))))).................. (-12.46 = -14.22 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:59 2006