Locus 10104

Sequence ID 3R_DroMel_CAF1
Location 27,079,984 – 27,080,092
Length 108
Max. P 0.946880
window16086

overview

Window 6

Location 27,079,984 – 27,080,092
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.30
Mean single sequence MFE -35.00
Consensus MFE -23.88
Energy contribution -25.80
Covariance contribution 1.92
Combinations/Pair 1.22
Mean z-score -3.25
Structure conservation index 0.68
SVM decision value 1.37
SVM RNA-class probability 0.946880
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27079984 108 - 27905053
AUCAUGAAGGGAGAUGCCAGCACUGGAGUUUCCAUCAUGAAAAUCGAACCUCACCGGUUCGAUAUCGGUGAUGUAAGUUCAUUCUUAUCUUACCAUUGUAUGCAGUAG
.((((((..((((((.(((....))).)))))).))))))..((((((((.....))))))))...(((((.(((((......))))).)))))((((....)))).. ( -39.30)
>DroPse_CAF1 21500 104 - 1
AUUAUGAAGGGCGAUGCGAGAACAGGUGUAUCAAUUAUGAAAAUUGAGCCACAUCAUUUUGAUAUUGGUGCUGUAAGUGAUUGCAUA----AAGCUUAGAGGCACUUC
.....((((....((((((..((....((((((((.((.(((((.((......))))))).)))))))))).....))..)))))).----..(((....))).)))) ( -24.10)
>DroSec_CAF1 16564 108 - 1
AUCAUGAAGGGAGAUGCCAGCACUGGAGUUUCCAUCAUGAAAAUCGAACCUCACCGGUUUGAUAUCGGUGAUGUAAGUUCAUUCUUACCUUACCAUUGUAUGCAGUAG
.((((((..((((((.(((....))).)))))).))))))..((((((((.....))))))))...(((((.(((((......))))).)))))((((....)))).. ( -38.60)
>DroSim_CAF1 17714 107 - 1
AUCAUGAAGGGAGAUGCCAGCACUGGAGUUUCCAUCAUGAAAAUCGAACCUCACCGGUUCGA-AUCGGUGAUGUAAGUUCAUUCUUACCUUACCAUUGUAUGCAGUAG
.((((((..((((((.(((....))).)))))).))))))...(((((((.....)))))))-...(((((.(((((......))))).)))))((((....)))).. ( -39.70)
>DroEre_CAF1 16851 108 - 1
AUCAUGAAGGGAGAUGCCAUCACUGGGGUUUCCAUCAUGAAAAUCGAACCUCACCGGUUUGAUAUUGGUGCAGUAAGUUCGUUCUCUCCUUACCAUCAUGUCAUGUAG
..(((((..((((((.(((....))).))))))..(((((..((((((((.....))))))))..(((((..(..((......))..)..)))))))))))))))... ( -34.20)
>DroYak_CAF1 16890 108 - 1
AUCAUGAAGGGAGAUGCCAGCACUGGGGUUUCCAUCAUGAAAAUCGAACCUCACCGCUUCGAUAUCGGUGCUGUGAGUUCAUUGUUAUCUAACCAUCAUGUCAAGACC
.((((((..((((((.(((....))).)))))).)))))).....((((.((((.((.(((....))).)).))))))))............................ ( -34.10)
>consensus
AUCAUGAAGGGAGAUGCCAGCACUGGAGUUUCCAUCAUGAAAAUCGAACCUCACCGGUUCGAUAUCGGUGAUGUAAGUUCAUUCUUACCUUACCAUUAUAUGCAGUAG
.((((((..((((((.(((....))).)))))).))))))..((((((((.....))))))))...((((..(((((......)))))..)))).............. (-23.88 = -25.80 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:58 2006