Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,078,346 – 27,078,453 |
Length | 107 |
Max. P | 0.746324 |
Location | 27,078,346 – 27,078,453 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.81 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -25.70 |
Energy contribution | -26.26 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.08 |
Structure conservation index | 0.73 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746324 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27078346 107 + 27905053 AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUAAAACGUAGCACUAGAAGUGUGCAACGUAAGGCGACAAAGUCUGCAACCUUAAAACGGUAG .(((((((((((((((.....((.((((..(....)...))))))....((((.((((.......)))).)))).((((......)))))))))))).))))))).. ( -43.80) >DroSec_CAF1 14924 107 + 1 AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCGGCCGGCUAAAACGUAGCACUAGAGGUGGGCAACAUAAGGUGACAAGGUCUGCAACAUUAAAACGGUAG .(((((((...((((((((.((((((....)))....(.(((.((((.....))))......))).))))......(....)...)).))))))....))))))).. ( -35.00) >DroSim_CAF1 16075 107 + 1 AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUAAAACGUAGCACUAGAGGUGGGCAACGUAAGGUGACAAGGUCUGCAACAUUAAAACGGUAG .(((((((...((((((((((..(((....)))...((.(((.((((.....))))......)))..)).))))..(....)......))))))....))))))).. ( -35.90) >DroEre_CAF1 15153 106 + 1 AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUA-AACGUAUCAGUAAAGGUGGGUAACGUAAGGCGGCAAAGGCUAUAACAUUAAAACGGAAC .(((((((.(.(((((....((((((....)))...))).(((.((.-.((......))..)).)))))))).).)))))))......................... ( -29.30) >DroYak_CAF1 15219 107 + 1 AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCGGCCGGCUAAAACGUAUCACUAGAGGUGGGUAACGUAAGGUGGCUAAGACGGUAAUAUUCAAACGGAAC .(((((((..((((((.......(((....)))...))))))(((((..((((.((((.....))))...))))....))))).)))))))................ ( -33.10) >consensus AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUAAAACGUAGCACUAGAGGUGGGCAACGUAAGGUGACAAAGUCUGCAACAUUAAAACGGUAG .(((((((..((((((....((((......))))..)))))).(((...((((.((((.....))))...))))..)))...................))))))).. (-25.70 = -26.26 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:57 2006